View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19030_high_18 (Length: 273)
Name: NF19030_high_18
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19030_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 45348074 - 45348321
Alignment:
| Q |
9 |
agcagagaaaatctgaatggtggaggaagagagtgggggtggggtgcagtcagttttctttaatttcagnnnnnnnatcttaacaaactaa-tgcacaaa |
107 |
Q |
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| T |
45348074 |
agcagagaaaatctgaatggtggaggaagagagtgggggtggggtgcagtcagttttctttaatttcagtttttttatcttaacaaactaaatgcacaaa |
45348173 |
T |
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| Q |
108 |
ggttgaaaagaattactgtgaaggtaacgagtaccctagaaaagttgtggaactaaatcatacattaactatagtagatgaaccaaaagtacaattaaga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45348174 |
ggttgaaaagaattactgtgaaggtaacgagtaccctagaaaagttgtggaactaaatcatacattaactatagtagatgaaccaaaagtacaattaaga |
45348273 |
T |
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| Q |
208 |
caagtaaaacataccaggttcccgtgatcaagaatcagaatattatcc |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45348274 |
caagtaaaacataccaggttcccgtgatcaagaatcagaatattatcc |
45348321 |
T |
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