View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19030_high_21 (Length: 226)
Name: NF19030_high_21
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19030_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 881066 - 880900
Alignment:
| Q |
1 |
tcctagaggccatcatctctgtttctctgtatccaatttccaatccttcctccaaactctaaaggttttc--ttttcatttcctattctccttcctaaat |
98 |
Q |
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| T |
881066 |
tcctagaggccatcatctctgtttctctgtatccaatttccaatccttcctccaaactctcaaggttttcttttttcatttcctat----ggtcctaaat |
880971 |
T |
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| Q |
99 |
ataggatagagtttggtcgtatcaaatgcattaacttttatttactcaattgtctcttatattgaagacac |
169 |
Q |
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|||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
880970 |
ataggacaaagtttggtcgtatcaaatacattaacttttatttactcaattgtctcttatattgaagacac |
880900 |
T |
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