View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19030_high_27 (Length: 206)

Name: NF19030_high_27
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19030_high_27
NF19030_high_27
[»] chr7 (7 HSPs)
chr7 (1-206)||(279959-280163)
chr7 (159-206)||(24513821-24513868)
chr7 (159-206)||(48771962-48772009)
chr7 (159-206)||(49050496-49050543)
chr7 (158-206)||(26703148-26703196)
chr7 (155-203)||(37233580-37233628)
chr7 (161-206)||(5934147-5934192)
[»] scaffold0299 (1 HSPs)
scaffold0299 (159-206)||(11552-11599)
[»] chr8 (6 HSPs)
chr8 (159-206)||(18540322-18540369)
chr8 (159-206)||(968386-968433)
chr8 (155-206)||(6569776-6569827)
chr8 (159-206)||(16852364-16852411)
chr8 (155-206)||(31087263-31087314)
chr8 (156-206)||(34628663-34628713)
[»] chr4 (2 HSPs)
chr4 (162-206)||(39509097-39509141)
chr4 (159-206)||(38869792-38869839)
[»] chr3 (10 HSPs)
chr3 (162-206)||(44743860-44743904)
chr3 (159-206)||(2667886-2667933)
chr3 (159-206)||(10499114-10499161)
chr3 (159-202)||(16991566-16991609)
chr3 (159-206)||(51903883-51903930)
chr3 (160-206)||(10445144-10445190)
chr3 (168-206)||(52769988-52770026)
chr3 (160-205)||(31520611-31520656)
chr3 (159-203)||(4844519-4844563)
chr3 (159-203)||(4870215-4870259)
[»] scaffold0258 (1 HSPs)
scaffold0258 (159-206)||(15328-15375)
[»] scaffold0009 (1 HSPs)
scaffold0009 (159-206)||(19852-19899)
[»] chr6 (2 HSPs)
chr6 (159-206)||(33549128-33549175)
chr6 (159-205)||(31622997-31623043)
[»] chr5 (2 HSPs)
chr5 (159-206)||(30109313-30109360)
chr5 (166-206)||(12883871-12883911)
[»] chr2 (1 HSPs)
chr2 (159-206)||(21213793-21213840)
[»] chr1 (7 HSPs)
chr1 (163-206)||(9117147-9117190)
chr1 (159-202)||(9879462-9879505)
chr1 (155-206)||(12587290-12587341)
chr1 (159-206)||(15786325-15786372)
chr1 (159-206)||(16893418-16893465)
chr1 (159-206)||(31383803-31383850)
chr1 (159-206)||(52336779-52336826)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 280163 - 279959
Alignment:
1 aagttcatgaagccaccatctctggtgacacctcaaccgccgctgccaaaaacgcttgcgcaaatattagcgaacactttcgatgtaccaactagccaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
280163 aagttcatgaagccaccatctctggtgacacctcaaccgccgctgagaaaaacgtttgcgcaaatattagcaaacactttcgatgtaccaactagccaac 280064  T
101 taaacgatgcatcaagggtgagcattcaagtgttgataataacattcatgtgacgtgatattggcttgggatctgggagtgtacttctccttgaggtctc 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||    
280063 taaacgatgcattaagggtgagcattcaagtgttgataataacattcatgtgacgtgatattggcttgggat-tgggagtgtactcctccttaaggtctc 279965  T
201 aggttc 206  Q
    ||||||    
279964 aggttc 279959  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 24513821 - 24513868
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||    
24513821 tattggcttgagatttgggagtgtacttctccttgaggtctcaggttc 24513868  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 48771962 - 48772009
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||    
48771962 tattggcttgggatctgggagtgtgctcctccttgaggtctcaggttc 48772009  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 49050543 - 49050496
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||| |||||||||||| ||||||||| ||||||||||||||||||||    
49050543 tattagcttgggatctgcgagtgtactcctccttgaggtctcaggttc 49050496  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 26703148 - 26703196
Alignment:
158 atattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    ||||||||||||||||||||||||| || || || ||||||||||||||    
26703148 atattggcttgggatctgggagtgtgctccttctcgaggtctcaggttc 26703196  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 37233628 - 37233580
Alignment:
155 gtgatattggcttgggatctgggagtgtacttctccttgaggtctcagg 203  Q
    |||||||||||||||||| ||||||||| || |||||| ||||||||||    
37233628 gtgatattggcttgggatgtgggagtgtgctcctccttaaggtctcagg 37233580  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 5934147 - 5934192
Alignment:
161 ttggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||||||||||||| || ||||||||||| ||| ||||    
5934147 ttggcttgggatctgggagtgtgctcctccttgaggtttcatgttc 5934192  T

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Target: scaffold0299 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 11552 - 11599
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||||||||||||||| || ||||| ||||||||||||||    
11552 tattggcttgggatctgggagtgtgctcctcctcgaggtctcaggttc 11599  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 18540322 - 18540369
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||||    
18540322 tattggcttgggacctgggagtgtacttctcctcaaggtctcaggttc 18540369  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 968386 - 968433
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    ||||||||||||| |||||||||| || ||||| ||||||||||||||    
968386 tattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttc 968433  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 6569827 - 6569776
Alignment:
155 gtgatattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||||||||||||||||||| || |||||| |||| ||| ||||    
6569827 gtgatattggcttgggatctgggagtgtgctcctcctttaggtttcatgttc 6569776  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 16852364 - 16852411
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    ||||||||||||| |||||||||| || ||||| ||||||||||||||    
16852364 tattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttc 16852411  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 31087314 - 31087263
Alignment:
155 gtgatattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||||||||||||||||| | |  ||||| ||||||||||||||    
31087314 gtgatattggcttgggatctgggagtatccccctcctcgaggtctcaggttc 31087263  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 34628663 - 34628713
Alignment:
156 tgatattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||||||||||||||||||  |||||||  | |||||||||||    
34628663 tgatattggcttgggatctgggagtgtgtttctcctcaaagtctcaggttc 34628713  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 39509097 - 39509141
Alignment:
162 tggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||    
39509097 tggcttgggatctgggagtgtgctcctcctcgaggtctcaggttc 39509141  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 38869792 - 38869839
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||||||||||||||| || |||||  |||||||||||||    
38869792 tattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttc 38869839  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 44743904 - 44743860
Alignment:
162 tggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||    
44743904 tggcttgggatctgggagtgtgctcctcctcgaggtctcaggttc 44743860  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 2667886 - 2667933
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||||||||||||||| ||  |||| ||||||||||||||    
2667886 tattggcttgggatctgggagtgtgctcttcctcgaggtctcaggttc 2667933  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 10499161 - 10499114
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||||||||||||| | ||  |||||||||||||||||||    
10499161 tattggcttgggatctgggagtctgctcttccttgaggtctcaggttc 10499114  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 16991566 - 16991609
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcag 202  Q
    |||||||||||||||||||||||||||  || ||||||||||||    
16991566 tattggcttgggatctgggagtgtactcttctttgaggtctcag 16991609  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 51903930 - 51903883
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||||    
51903930 tattggcttgggatctgggagtgtgctcctcctcgtggtctcaggttc 51903883  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 10445190 - 10445144
Alignment:
160 attggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||| |||||||||| || ||||| ||||||||||||||    
10445190 attggcttgggacctgggagtgtgctcctcctcgaggtctcaggttc 10445144  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 52770026 - 52769988
Alignment:
168 gggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    ||||||||||||||| || ||||||||||||||||||||    
52770026 gggatctgggagtgtgctcctccttgaggtctcaggttc 52769988  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 31520656 - 31520611
Alignment:
160 attggcttgggatctgggagtgtacttctccttgaggtctcaggtt 205  Q
    ||||||||||||||||||||||| || ||||| ||||||| |||||    
31520656 attggcttgggatctgggagtgtgctcctcctcgaggtcttaggtt 31520611  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 4844563 - 4844519
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcagg 203  Q
    ||||| |||||||||||||||||| || ||||| |||||||||||    
4844563 tattgacttgggatctgggagtgtgctcctcctcgaggtctcagg 4844519  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 4870259 - 4870215
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcagg 203  Q
    ||||| |||||||||||||||||| || ||||| |||||||||||    
4870259 tattgacttgggatctgggagtgtgctcctcctcgaggtctcagg 4870215  T

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Target: scaffold0258 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 15375 - 15328
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    ||||||||||||| |||||||||| || ||||| ||||||||||||||    
15375 tattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttc 15328  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 19899 - 19852
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
19899 tattggcttgggatctgggagtctgctcctccttgaggtctcaagttc 19852  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 33549128 - 33549175
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    ||||||||||||| |||||||||| || ||||| ||||||||||||||    
33549128 tattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttc 33549175  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 31623043 - 31622997
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggtt 205  Q
    ||||||||||||| |||||||||| || ||||| |||||||||||||    
31623043 tattggcttgggacctgggagtgtgctcctcctcgaggtctcaggtt 31622997  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 30109360 - 30109313
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||| || |||||||||| || ||||||||||||||||||||    
30109360 tattggcttgtgacctgggagtgtgctcctccttgaggtctcaggttc 30109313  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 12883871 - 12883911
Alignment:
166 ttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    ||||||||||||||||| || ||||||||||||||| ||||    
12883871 ttgggatctgggagtgtgctcctccttgaggtctcatgttc 12883911  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 21213793 - 21213840
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    ||||||||||||| ||||||||||  | ||||||||||||||||||||    
21213793 tattggcttgggacctgggagtgtgttcctccttgaggtctcaggttc 21213840  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 9117147 - 9117190
Alignment:
163 ggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||||| ||||| || ||||||||||||||||||||    
9117147 ggcttgggatctggaagtgtgctcctccttgaggtctcaggttc 9117190  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 9879462 - 9879505
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcag 202  Q
    ||||||||||||||||| |||||||||  |||||||||||||||    
9879462 tattggcttgggatctgagagtgtactcttccttgaggtctcag 9879505  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 12587290 - 12587341
Alignment:
155 gtgatattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    ||||||||| ||||||||||| |||||| || ||||| ||||||||||||||    
12587290 gtgatattgacttgggatctgtgagtgtgctcctcctcgaggtctcaggttc 12587341  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 15786372 - 15786325
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||||||||||||||| || |||||  |||||||||||||    
15786372 tattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttc 15786325  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 16893418 - 16893465
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||| ||| |||||||||||| ||||| ||||||||||||||    
16893418 tattggcttgagatttgggagtgtactcctcctcgaggtctcaggttc 16893465  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 31383850 - 31383803
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    ||||||||||||| |||||||||| || ||||||| ||||||||||||    
31383850 tattggcttgggacctgggagtgtgctcctccttggggtctcaggttc 31383803  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 52336826 - 52336779
Alignment:
159 tattggcttgggatctgggagtgtacttctccttgaggtctcaggttc 206  Q
    |||||||||||||||||||||||| || |||||| || ||||||||||    
52336826 tattggcttgggatctgggagtgtgctcctccttaagatctcaggttc 52336779  T

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