View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19030_low_1 (Length: 776)

Name: NF19030_low_1
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19030_low_1
NF19030_low_1
[»] chr6 (5 HSPs)
chr6 (20-746)||(10386594-10387343)
chr6 (524-588)||(34260116-34260180)
chr6 (524-588)||(6826558-6826622)
chr6 (524-588)||(34262190-34262254)
chr6 (669-755)||(3900707-3900794)
[»] chr2 (8 HSPs)
chr2 (522-588)||(35029866-35029932)
chr2 (523-588)||(34228146-34228211)
chr2 (523-588)||(34229079-34229144)
chr2 (524-568)||(6205448-6205492)
chr2 (537-588)||(1233713-1233764)
chr2 (668-719)||(21351880-21351931)
chr2 (523-588)||(4855344-4855409)
chr2 (667-755)||(42295374-42295463)
[»] chr5 (4 HSPs)
chr5 (524-588)||(120073-120137)
chr5 (529-584)||(2639717-2639772)
chr5 (667-710)||(41061726-41061769)
chr5 (667-719)||(40044646-40044698)
[»] chr8 (12 HSPs)
chr8 (527-588)||(42503029-42503090)
chr8 (524-588)||(7870377-7870441)
chr8 (524-588)||(11519350-11519414)
chr8 (536-588)||(38444469-38444521)
chr8 (524-588)||(42503926-42503990)
chr8 (524-588)||(42578709-42578773)
chr8 (523-585)||(12203350-12203412)
chr8 (523-585)||(12447778-12447840)
chr8 (524-588)||(6462620-6462684)
chr8 (524-588)||(38443695-38443759)
chr8 (667-755)||(4267803-4267892)
chr8 (529-586)||(8814483-8814540)
[»] chr4 (12 HSPs)
chr4 (529-570)||(32158804-32158845)
chr4 (667-755)||(34277397-34277486)
chr4 (524-588)||(39310396-39310460)
chr4 (525-588)||(24484784-24484847)
chr4 (523-570)||(32159544-32159591)
chr4 (668-755)||(42414129-42414216)
chr4 (524-588)||(39311376-39311440)
chr4 (537-588)||(14087669-14087720)
chr4 (529-588)||(21857542-21857601)
chr4 (529-588)||(21913405-21913464)
chr4 (667-755)||(42430440-42430529)
chr4 (671-755)||(47310418-47310503)
[»] chr1 (4 HSPs)
chr1 (524-584)||(7338807-7338867)
chr1 (529-588)||(49618303-49618362)
chr1 (527-588)||(7338012-7338073)
chr1 (667-755)||(41198077-41198166)
[»] chr3 (2 HSPs)
chr3 (525-588)||(35903690-35903753)
chr3 (524-568)||(44312393-44312437)
[»] chr7 (3 HSPs)
chr7 (667-753)||(36582090-36582177)
chr7 (523-588)||(5956438-5956503)
chr7 (667-708)||(29987572-29987613)


Alignment Details
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 20 - 746
Target Start/End: Complemental strand, 10387343 - 10386594
Alignment:
Q  20 gataattacaaagtacaatttctgaaatggatttggcgaacgaaatggcgagggagaaaattctcatagtttagctcaggtggtaaaacaatgagcatat 119  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||  ||||| ||||||||||||||| |||||||||||||||| ||| ||||||||    
T  10387343 gataatcacaaagtacaatttctgaaatggatttggcgaatgaaatgttgagggtgaaaattctcatagtctagctcaggtggtaaagcaacgagcatat 10387244  T
Q  120 tagattgctttctcattaacgaagggtgggagtgtagggnnnnnnnnaggatcccaacggtgttgggatttctcggcctctcattcttgtt-aaactcac 218  Q
    |||||||||||||||||||||||||||||  ||||||||        |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10387243 tagattgctttctcattaacgaagggtggccgtgtaggggttttttgaggatcccaacggtgttgggatttctcggcctctcattcttgtttaaactcac 10387144  T
Q  219 tcatgaattttcgaaagnnnnnnnnntgccgaagaaatgaggagcttaaaatgttggacataaatgcttacggaaaatattctaggaaaata-ttacagc 317  Q
    || ||| || ||| ||          |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||    
T  10387143 tcttgacttatcggaa----aaaaaatgccgaagaaatgaggagcttaaaatgttggacataaatgtttacgggaaatattctaggaaaataattacagc 10387048  T
Q  318 atatcctatgttgtgggatctattccttttaattcttttgggattctagtggaaaccaatccaagaagatcaatcattgaaaacctatactgaaatctat 417  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  10387047 atatcctatgttgtgggatttattccttttaattcttttgggattctagtggaaaccaatccaagaagatcaatcattgaaaacctataattaaatctat 10386948  T
Q  418 --caagaataaattatctgcttggtgtggcaaatatttgtcgatgggtggtagaaatgtattgataatttcattgttgtccattctgcttatgtttcatt 515  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  10386947 atcaagaataaattatctgcttggtgtggcaaatatttgtcgatgggtggtagaaatgtattgataatttcatttttgtccattctgcttctgtttcatt 10386848  T
Q  516 cct-cttcgga-gtccatctctgctccatttagttttcctcaa---------------------tttaccccatttcaaattatagatgtgtgacaattt 592  Q
    ||| ||||||| |||||||| | ||||||||| |||| |||||                     |||||||||||||||||||||||||||||||| |||    
T  10386847 cctccttcggaggtccatctttactccatttaatttttctcaatttaccccatttcaatttttttttaccccatttcaaattatagatgtgtgacatttt 10386748  T
Q  593 gttgaagtcactcatgactattcagagaatttttctatgtggttgaaagtttggatgataagaaggtgtgctttggggtgttcgcgatgcggtttgaatc 692  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||||     
T  10386747 gttgaagtcactcatgactattcagagaatttttctatgtggttgacagtttggatgataagaaggtgtgctttggggtgctcgtggtgcggtttgaatt 10386648  T
Q  693 ggttttaaggtaaaatgttatccgatctaaactagaattagatgtggttcggtt 746  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10386647 ggttttgaggtaaaatgttatccgatctaaactagaattagatgtggttcggtt 10386594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 524 - 588
Target Start/End: Original strand, 34260116 - 34260180
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||||||||| ||||||||||   |||||||||||||||||||||||| | || |||||||||||    
T  34260116 gagtccatctttgctccattttcctttcctcaatttaccccatttcaagtcatggatgtgtgaca 34260180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 588
Target Start/End: Original strand, 6826558 - 6826622
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||| ||||| ||||||||||   |||||||||||||||||||||| ||| || |||||||||||    
T  6826558 gagtgcatctttgctccatttcactttcctcaatttaccccatttctaataatggatgtgtgaca 6826622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 588
Target Start/End: Complemental strand, 34262254 - 34262190
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||| ||||| ||||||||||   ||||||||||||||||||||| || |||| |||||||||||    
T  34262254 gagttcatctttgctccattttcctttcctcaatttaccccattttaagttatggatgtgtgaca 34262190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 755
Target Start/End: Original strand, 3900707 - 3900794
Alignment:
Q  669 ggtgttcgcgatgcggtttgaatcggttttaaggtaaaatgttatccgatct-aaactagaattagatgtggttcggttcggtttgga 755  Q
    ||||||| || ||||||||||||||||||| ||| |||| |||||| ||||| |||  | ||| | ||||| ||||||||||||||||    
T  3900707 ggtgttcacggtgcggtttgaatcggttttgaggcaaaacgttatctgatctgaaataaaaatcacatgtgattcggttcggtttgga 3900794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 522 - 588
Target Start/End: Complemental strand, 35029932 - 35029866
Alignment:
Q  522 cggagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    ||||||| |||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||    
T  35029932 cggagtctatctttgctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgaca 35029866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 523 - 588
Target Start/End: Original strand, 34228146 - 34228211
Alignment:
Q  523 ggagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    ||||||||||| |||||||||||   ||||||||||||||||||||||| ||||||||||||||||    
T  34228146 ggagtccatctttgctccatttaagattcctcaatttaccccatttcaagttatagatgtgtgaca 34228211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 523 - 588
Target Start/End: Complemental strand, 34229144 - 34229079
Alignment:
Q  523 ggagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    ||||||||||| |||||||||||   |||||||||||||||||||| || | ||||||||||||||    
T  34229144 ggagtccatctttgctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgaca 34229079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 568
Target Start/End: Complemental strand, 6205492 - 6205448
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccattt 568  Q
    |||||||||| ||||||||||||  ||||||||||||||||||||    
T  6205492 gagtccatctttgctccatttaggcttcctcaatttaccccattt 6205448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 588
Target Start/End: Original strand, 1233713 - 1233764
Alignment:
Q  537 ctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||||||||| ||||||||||||||||||||| || | || |||||||||||    
T  1233713 ctccatttaggtttcctcaatttaccccatttgaagtcatggatgtgtgaca 1233764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 719
Target Start/End: Original strand, 21351880 - 21351931
Alignment:
Q  668 gggtgttcgcgatgcggtttgaatcggttttaaggtaaaatgttatccgatc 719  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||| | ||||||    
T  21351880 gggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgatc 21351931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 588
Target Start/End: Complemental strand, 4855409 - 4855344
Alignment:
Q  523 ggagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    ||||| ||||| |||||||||||  ||| |||||||||| || ||||||  |||||||||||||||    
T  4855409 ggagttcatctttgctccatttatgtttgctcaatttactccttttcaatgtatagatgtgtgaca 4855344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 755
Target Start/End: Original strand, 42295374 - 42295463
Alignment:
Q  667 ggggtgttcgcgatgcggtttgaatcggttttaaggtaaaatgttatccgatctaaactagaatt-agatgtggttcggttcggtttgga 755  Q
    ||||||||| || ||||||||| ||| ||||| ||||||||||  | |||||| ||| || || | | ||||||||||||||||||||||    
T  42295374 ggggtgttcacggtgcggtttggatcagttttgaggtaaaatgccaaccgatccaaaataaaaatcacatgtggttcggttcggtttgga 42295463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 524 - 588
Target Start/End: Original strand, 120073 - 120137
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||| ||||| |||||||||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  120073 gagttcatctttgctccatttagctttcctcaatttaccccatttcaagttatagatgcgtgaca 120137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 529 - 584
Target Start/End: Original strand, 2639717 - 2639772
Alignment:
Q  529 catctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgt 584  Q
    ||||| ||||||||||| |||| |||||||||||||||||||| ||||||||||||    
T  2639717 catctttgctccatttatttttgctcaatttaccccatttcaagttatagatgtgt 2639772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 667 - 710
Target Start/End: Complemental strand, 41061769 - 41061726
Alignment:
Q  667 ggggtgttcgcgatgcggtttgaatcggttttaaggtaaaatgt 710  Q
    |||||||||||| ||||||||| |||||||||||||||||||||    
T  41061769 ggggtgttcgcggtgcggtttggatcggttttaaggtaaaatgt 41061726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 667 - 719
Target Start/End: Complemental strand, 40044698 - 40044646
Alignment:
Q  667 ggggtgttcgcgatgcggtttgaatcggttttaaggtaaaatgttatccgatc 719  Q
    |||||||||||| |||||||||||||| |||| ||| ||||||| ||||||||    
T  40044698 ggggtgttcgcggtgcggtttgaatcgattttgaggcaaaatgtcatccgatc 40044646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 527 - 588
Target Start/End: Original strand, 42503029 - 42503090
Alignment:
Q  527 tccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    ||||||| |||||||||||  ||||||||||||||||||||||| || ||||||||||||||    
T  42503029 tccatctttgctccatttaagtttcctcaatttaccccatttcatatcatagatgtgtgaca 42503090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 524 - 588
Target Start/End: Complemental strand, 7870441 - 7870377
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||||||||| ||||||||||||  || ||||||||||||||||| || ||||||||||||||||    
T  7870441 gagtccatctttgctccatttagactttctcaatttaccccatttgaagttatagatgtgtgaca 7870377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 524 - 588
Target Start/End: Original strand, 11519350 - 11519414
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||| ||||| ||||| |||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  11519350 gagttcatctttgctcaatttaggtttcttcaatttaccccatttcaaatcatagatgtgtgaca 11519414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 536 - 588
Target Start/End: Complemental strand, 38444521 - 38444469
Alignment:
Q  536 gctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  38444521 gctccatttagatttcctcaatttacccaatttcaagttatagatgtgtgaca 38444469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 524 - 588
Target Start/End: Complemental strand, 42503990 - 42503926
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||||||||| ||||||||||||  ||||||||||||||||||| || || ||||||||||||||    
T  42503990 gagtccatctttgctccatttaggcttcctcaatttaccccattccatatcatagatgtgtgaca 42503926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 524 - 588
Target Start/End: Original strand, 42578709 - 42578773
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||||||||| |||||||||||  ||| |||||||||||||||||||| | |||||||| |||||    
T  42578709 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgaca 42578773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 523 - 585
Target Start/End: Complemental strand, 12203412 - 12203350
Alignment:
Q  523 ggagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtg 585  Q
    ||||||||||| ||||||||||  ||||||||||||||  ||||||||| | |||||||||||    
T  12203412 ggagtccatctttgctccatttcattttcctcaatttataccatttcaagtcatagatgtgtg 12203350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 523 - 585
Target Start/End: Complemental strand, 12447840 - 12447778
Alignment:
Q  523 ggagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtg 585  Q
    ||||||||||| ||||||||||  ||||||||||||||  ||||||||| | |||||||||||    
T  12447840 ggagtccatctttgctccatttcattttcctcaatttataccatttcaagtcatagatgtgtg 12447778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 588
Target Start/End: Complemental strand, 6462684 - 6462620
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||||||||| |||||||||||  ||| |||||||||||||||||||| |  ||||||| |||||    
T  6462684 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcctagatgtatgaca 6462620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 588
Target Start/End: Original strand, 38443695 - 38443759
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||||||||| |||||||||||  ||||| |||||||||||||||||| | |||| || ||||||    
T  38443695 gagtccatctttgctccatttaagtttccacaatttaccccatttcaagtcatagttgcgtgaca 38443759  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 755
Target Start/End: Complemental strand, 4267892 - 4267803
Alignment:
Q  667 ggggtgttcgcgatgcggtttgaatcggttttaaggtaaaatgttatccgatctaaact-agaattagatgtggttcggttcggtttgga 755  Q
    |||||||||||| ||||||||| |||| |||| ||||||||||| | |||||| ||| | | ||| | ||| |||||||||| |||||||    
T  4267892 ggggtgttcgcggtgcggtttggatcgattttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcagtttgga 4267803  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 586
Target Start/End: Complemental strand, 8814540 - 8814483
Alignment:
Q  529 catctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtga 586  Q
    ||||| |||||||||| | |||||||||||||||||||| ||| | || |||||||||    
T  8814540 catctttgctccattttggtttcctcaatttaccccattacaagtcatggatgtgtga 8814483  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 529 - 570
Target Start/End: Original strand, 32158804 - 32158845
Alignment:
Q  529 catctctgctccatttagttttcctcaatttaccccatttca 570  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  32158804 catctctgctccatttaggtttcctcaatttaccccatttca 32158845  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 667 - 755
Target Start/End: Complemental strand, 34277486 - 34277397
Alignment:
Q  667 ggggtgttcgcgatgcggtttgaatcggttttaaggtaaaatgttatccgatctaaact-agaattagatgtggttcggttcggtttgga 755  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||| | |||||| ||| | | ||| | ||| ||||||||||||||||||    
T  34277486 ggggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcggtttgga 34277397  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 524 - 588
Target Start/End: Original strand, 39310396 - 39310460
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||||||||| |||||||||||   |||||||||||| |||||||||| |||||||||| |||||    
T  39310396 gagtccatctttgctccatttaagattcctcaatttatcccatttcaagttatagatgtatgaca 39310460  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 588
Target Start/End: Original strand, 24484784 - 24484847
Alignment:
Q  525 agtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    ||||||||| |||||||||||   |||||||||||| || ||||||| ||||||||||||||||    
T  24484784 agtccatctttgctccatttaagattcctcaatttatcctatttcaagttatagatgtgtgaca 24484847  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 523 - 570
Target Start/End: Complemental strand, 32159591 - 32159544
Alignment:
Q  523 ggagtccatctctgctccatttagttttcctcaatttaccccatttca 570  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  32159591 ggagtgcatctttgctccatttaggtttcctcaatttaccccatttca 32159544  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 668 - 755
Target Start/End: Original strand, 42414129 - 42414216
Alignment:
Q  668 gggtgttcgcgatgcggtttgaatcggttttaaggtaaaatgttatccgatctaaactagaattagatgtggttcggttcggtttgga 755  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||| | |||||  |||  | ||| | ||| ||||||||||||||||||    
T  42414129 gggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgattcaaataaaaatcacatgcggttcggttcggtttgga 42414216  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 588
Target Start/End: Complemental strand, 39311440 - 39311376
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||||||||| |||||||||||   || ||||||||||||||||| || | ||||||||||||||    
T  39311440 gagtccatctttgctccatttaagatttctcaatttaccccattttaagtcatagatgtgtgaca 39311376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 588
Target Start/End: Original strand, 14087669 - 14087720
Alignment:
Q  537 ctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||||||||  |||||||||||||||||||||||| ||||| ||||| ||||    
T  14087669 ctccatttaactttcctcaatttaccccatttcaatttataaatgtgcgaca 14087720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 588
Target Start/End: Complemental strand, 21857601 - 21857542
Alignment:
Q  529 catctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    ||||| |||||||||||  ||||||||||||| ||||||| || |||||||||| |||||    
T  21857601 catctttgctccatttacctttcctcaatttatcccattttaagttatagatgtctgaca 21857542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 588
Target Start/End: Complemental strand, 21913464 - 21913405
Alignment:
Q  529 catctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    ||||| |||||||||||  ||||||||||||| ||||||| || |||||||||| |||||    
T  21913464 catctttgctccatttacctttcctcaatttatcccattttaagttatagatgtctgaca 21913405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 755
Target Start/End: Complemental strand, 42430529 - 42430440
Alignment:
Q  667 ggggtgttcgcgatgcggtttgaatcggttttaaggtaaaatgttatccgatctaaact-agaattagatgtggttcggttcggtttgga 755  Q
    |||||||||||| ||||||||| ||||||||| ||| ||||||| | || ||| ||| | | ||||| ||| || |||||||||||||||    
T  42430529 ggggtgttcgcggtgcggtttggatcggttttgaggcaaaatgtcaacccatccaaaataaaaattacatgcggatcggttcggtttgga 42430440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 671 - 755
Target Start/End: Complemental strand, 47310503 - 47310418
Alignment:
Q  671 tgttcgcgatgcggtttgaatcggttttaaggtaaaatgttatccgatctaaact-agaattagatgtggttcggttcggtttgga 755  Q
    |||| ||| |||||||||||| | |||| ||  ||||||| |||||||||||| | ||||| | ||| ||||||||||||||||||    
T  47310503 tgtttgcggtgcggtttgaattgattttgagtcaaaatgtcatccgatctaaaataagaatcacatgcggttcggttcggtttgga 47310418  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 524 - 584
Target Start/End: Complemental strand, 7338867 - 7338807
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgt 584  Q
    |||||||||| |||||||||||  |||||||||||||| ||||||||| | ||||||||||    
T  7338867 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagtcatagatgtgt 7338807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 529 - 588
Target Start/End: Original strand, 49618303 - 49618362
Alignment:
Q  529 catctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||  |||||||| |||||    
T  49618303 catctttgctccatttaggcttcctcaatttaccccatttcaaaccatagatgtctgaca 49618362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 588
Target Start/End: Original strand, 7338012 - 7338073
Alignment:
Q  527 tccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    ||||||| |||||||||||  ||| ||||||||| |||||||||| | |||||| |||||||    
T  7338012 tccatctttgctccatttatattttctcaatttatcccatttcaagtcatagatatgtgaca 7338073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 755
Target Start/End: Original strand, 41198077 - 41198166
Alignment:
Q  667 ggggtgttcgcgatgcggtttgaatcggttttaaggtaaaatgttatccgatctaaact-agaattagatgtggttcggttcggtttgga 755  Q
    |||||||||||| ||| ||||| |||| |||| ||||||||||| | |||||| ||| | | ||| | ||| ||||||||||||||||||    
T  41198077 ggggtgttcgcggtgcagtttggatcgattttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcggtttgga 41198166  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 588
Target Start/End: Original strand, 35903690 - 35903753
Alignment:
Q  525 agtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    |||| |||| |||||||||||| ||  |||||||||||||||||||| |||| |||||||||||    
T  35903690 agtctatctttgctccatttaggttctctcaatttaccccatttcaagttatggatgtgtgaca 35903753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 568
Target Start/End: Complemental strand, 44312437 - 44312393
Alignment:
Q  524 gagtccatctctgctccatttagttttcctcaatttaccccattt 568  Q
    |||||||||| |||||||||||  |||||||||||||||||||||    
T  44312437 gagtccatctttgctccatttatgtttcctcaatttaccccattt 44312393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 753
Target Start/End: Original strand, 36582090 - 36582177
Alignment:
Q  667 ggggtgttcgcgatgcggtttgaatcggttttaaggtaaaatgttatccgatctaaactagaa-ttagatgtggttcggttcggtttg 753  Q
    |||||||| ||| ||||||||  ||||||||||||| |||| || | |||||| ||| || || ||| ||||||||||||||||||||    
T  36582090 ggggtgtttgcggtgcggtttagatcggttttaaggcaaaacgtcaaccgatccaaaataaaaattacatgtggttcggttcggtttg 36582177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 588
Target Start/End: Original strand, 5956438 - 5956503
Alignment:
Q  523 ggagtccatctctgctccatttagttttcctcaatttaccccatttcaaattatagatgtgtgaca 588  Q
    ||||| ||||| ||||||||||   |||||||||||||||||||||| | | || |||||||||||    
T  5956438 ggagtgcatctttgctccatttcactttcctcaatttaccccatttctagtaatggatgtgtgaca 5956503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 708
Target Start/End: Original strand, 29987572 - 29987613
Alignment:
Q  667 ggggtgttcgcgatgcggtttgaatcggttttaaggtaaaat 708  Q
    |||||||||||||||||||||||| ||||||| ||| |||||    
T  29987572 ggggtgttcgcgatgcggtttgaaacggttttgaggaaaaat 29987613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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