View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19030_low_11 (Length: 440)
Name: NF19030_low_11
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19030_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Complemental strand, 8466349 - 8465938
Alignment:
| Q |
9 |
gattattcttgtgcatgtactaatagaagatggaaaatttaacatgaaaccagtgaaacaaggtaatcgtttacgtttaaaatgataacatattgaattt |
108 |
Q |
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| T |
8466349 |
gattattcttgtgcatgtactaatagaagatggaaaatttaacatgaaaccggtgaaacaaggtaatcgattaggtttaaaatgataacatattgaattt |
8466250 |
T |
|
| Q |
109 |
tctctttattttgtttgtagtttagtgtggtatctccatcatgttgacagagaagtcgaaggataattgttttgttcgttttaccggnnnnnnnnnnttc |
208 |
Q |
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| T |
8466249 |
tctctttattttgtttgtagtttagtgtggtatctccatcatgttgacagagaagtcgaaggataattgttttgttcgttttaccggaaaaaaattattc |
8466150 |
T |
|
| Q |
209 |
agcatgggagtttcaattcaagaggtttgttaaagggaaaggcttgtgaggtcatgtagatggcacctcctctgcgcctgctgcagatgctgcaatgatg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
8466149 |
agcatgggagtttcaattcaagaggtttgttaaagggaaaggcttgtgaggtcatgtagatggcacctcctctgcgcccgctgcagatgctgctatgatg |
8466050 |
T |
|
| Q |
309 |
gcagcttagcagacaaagtacgctcagattataacttggattctagcttctattgatcgtcaaatgattaataatccaaattccttttctattgctaaga |
408 |
Q |
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| T |
8466049 |
gcagcttagcagacaaagtacgctcagattataacttggattctagcttctattgatagtcaaatgattaataatccaaattccttttctattgctaaga |
8465950 |
T |
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| Q |
409 |
aaaggtgggact |
420 |
Q |
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| T |
8465949 |
aaaggtgggact |
8465938 |
T |
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