View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19030_low_12 (Length: 401)
Name: NF19030_low_12
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19030_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 36309758 - 36309385
Alignment:
| Q |
16 |
ataataaccaactggaatgggagggttgaatttaccacgtgcgtccacgatgcacatcattcgaacctcttcggttgggtttaatttcaaagcttttgtg |
115 |
Q |
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| T |
36309758 |
ataataaccaactggaatgggagggttgaatttaccacgtgcgtccacgatgcacatcattcgaacctcttcggttgggtttaatttcaaagcttttgtg |
36309659 |
T |
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| Q |
116 |
cgggaacgccaaatgtacgatgtgaggacttcaaaggtggttgatgcgttgtcgagatgacgtggaagtaggtttcgtattgcagatatctccacaggtc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36309658 |
tgggaacgccaaatgtacgatgtgaggacttcaaaggtggttgatgcgttgtcgagatgacgtggaagtaggtttcgtattgcagatatctccacaggtc |
36309559 |
T |
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| Q |
216 |
caaagaagaaagatcgttctgaaaattctgttgccgttaaaacggtatcagtttggacatcagttagttgttcgtattcgcggtggttgaatgtgacatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36309558 |
caaagaagaaagatcgttctgaaaattctgttgccgttaaaacggtatcagtttggacatcagttagttgttcgtattcgcggtggttgaatgtgacatg |
36309459 |
T |
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| Q |
316 |
tggaggatctcttgcgtttagaagttctctatgccacgcaggttgaatcggaggttgttttgcaccctttgcta |
389 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36309458 |
tggaggatctcttgcgtttagaagctctctatgccacgcaggttgaatcggaggttgttttgcaccctttgcta |
36309385 |
T |
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