View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19030_low_15 (Length: 323)
Name: NF19030_low_15
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19030_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 28220580 - 28220636
Alignment:
| Q |
16 |
ataggtaaaatgtaaaccaaaa-aaggttatcaaacactctaactaactagagtggt |
71 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
28220580 |
ataggtaaaatgtaaaccaaaaaaaggttatcaaacactctaactaactaaagtggt |
28220636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 25203520 - 25203625
Alignment:
| Q |
110 |
ggaggcccaatatggaagccagatacttgagtggcccaggcccaattgagaacatgttgagaatgccgagataagccatcttcaatttctccttcatgat |
209 |
Q |
| |
|
||||||||||| || || |||||| ||||||| | | |||| ||||||||||||||| ||||||| ||||||| || |||||| ||||||||| |||| |
|
|
| T |
25203520 |
ggaggcccaatgtgaaatccagatccttgagtagtctaggctcaattgagaacatgtcgagaatg-cgagatacgctatcttctgcttctccttcctgat |
25203618 |
T |
|
| Q |
210 |
ctctaac |
216 |
Q |
| |
|
||||||| |
|
|
| T |
25203619 |
ctctaac |
25203625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University