View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19030_low_16 (Length: 311)

Name: NF19030_low_16
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19030_low_16
NF19030_low_16
[»] chr3 (9 HSPs)
chr3 (18-295)||(1750099-1750376)
chr3 (20-155)||(1755301-1755438)
chr3 (18-134)||(1739887-1740003)
chr3 (18-134)||(1718549-1718665)
chr3 (180-295)||(7925375-7925489)
chr3 (164-259)||(42110914-42111009)
chr3 (167-253)||(15462096-15462182)
chr3 (167-295)||(26665427-26665555)
chr3 (164-288)||(33513327-33513449)
[»] chr6 (10 HSPs)
chr6 (167-295)||(29389113-29389241)
chr6 (212-294)||(29263808-29263890)
chr6 (180-280)||(30525786-30525886)
chr6 (194-295)||(9929327-9929427)
chr6 (207-251)||(18075515-18075559)
chr6 (172-283)||(31596486-31596597)
chr6 (181-290)||(6359039-6359148)
chr6 (167-228)||(14713919-14713980)
chr6 (164-288)||(33240804-33240926)
chr6 (187-283)||(2396756-2396851)
[»] chr7 (6 HSPs)
chr7 (165-288)||(3255078-3255200)
chr7 (212-295)||(17298395-17298478)
chr7 (181-228)||(44453696-44453743)
chr7 (169-203)||(3255204-3255238)
chr7 (181-283)||(22713386-22713488)
chr7 (207-287)||(35356363-35356441)
[»] chr8 (5 HSPs)
chr8 (20-130)||(38088444-38088554)
chr8 (181-295)||(13818775-13818888)
chr8 (214-287)||(37507577-37507649)
chr8 (164-288)||(27157622-27157745)
chr8 (180-228)||(29026155-29026203)
[»] chr5 (5 HSPs)
chr5 (183-295)||(40491707-40491819)
chr5 (167-283)||(22017653-22017768)
chr5 (211-292)||(14872627-14872707)
chr5 (183-287)||(22023719-22023823)
chr5 (165-222)||(35289186-35289243)
[»] chr1 (4 HSPs)
chr1 (187-287)||(46939987-46940087)
chr1 (207-295)||(17339716-17339803)
chr1 (211-293)||(2749180-2749261)
chr1 (232-288)||(48400952-48401007)
[»] chr4 (3 HSPs)
chr4 (171-293)||(7257525-7257646)
chr4 (164-283)||(38303297-38303416)
chr4 (207-240)||(12311889-12311922)
[»] chr2 (3 HSPs)
chr2 (166-288)||(45203224-45203345)
chr2 (207-288)||(43050152-43050232)
chr2 (213-283)||(38308073-38308143)
[»] scaffold0110 (1 HSPs)
scaffold0110 (207-280)||(6453-6526)
[»] scaffold0071 (1 HSPs)
scaffold0071 (167-253)||(10-96)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 1750376 - 1750099
Alignment:
Q  18 agatgcagtgagaatacctgttggatggtggatagctcaagatccaaatccacctaagccttttgttggaggatccttggcagcacttgacaatgctttc 117  Q
    ||||||||| ||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  1750376 agatgcagtcagaatacctgttggatggtggatagcctatgatccaaatccacctaagccttttgttggaggatccttggctgcacttgacaatgctttt 1750277  T
Q  118 acatgggcacagtaagtgttgagagatattttaattaagatttcagtgtttctttttccactctatgagtttctcgcgcgctctatactgttcggattat 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |||||||    
T  1750276 acatgggcacagtaagtcttgagagatattttaattaagatttcagtgtttctttttccaccctatgagtttcccgcacgctctatactgtttggattat 1750177  T
Q  218 agaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggattttagaatctaaatag 295  Q
    |||||||||||||||||||||||||||||||||||||||||  || |||||||||||| |||||||||||| ||||||    
T  1750176 agaatccgaacgaaataaacaccctatacaaacctcctaaatcacgttgaaacattttagattttagaatccaaatag 1750099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 1755438 - 1755301
Alignment:
Q  20 atgcagtgagaatacctgttggatggtggatagctcaagatccaaatccacctaagccttttgttggaggatccttggcagcacttgacaatgctttcac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||||||    
T  1755438 atgcagtgagaatacctgttggatggtggatagctcaagatccaaacccacctaagccttttgttggaggatcattggcagcattagacaatgctttcac 1755339  T
Q  120 atgggcacagtaagt-gttgaga-gatattttaattaa 155  Q
    |||||||||||||||  |||||| ||||||||||||||    
T  1755338 atgggcacagtaagtctttgagacgatattttaattaa 1755301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 1740003 - 1739887
Alignment:
Q  18 agatgcagtgagaatacctgttggatggtggatagctcaagatccaaatccacctaagccttttgttggaggatccttggcagcacttgacaatgctttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||    
T  1740003 agatgcagtgagaatacctgttggatggtggatagctcaagatccaaatccacctaagccttttgttgggggagctttggcagcacttgacaatgctttc 1739904  T
Q  118 acatgggcacagtaagt 134  Q
    ||||||||| |||||||    
T  1739903 acatgggcatagtaagt 1739887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 1718665 - 1718549
Alignment:
Q  18 agatgcagtgagaatacctgttggatggtggatagctcaagatccaaatccacctaagccttttgttggaggatccttggcagcacttgacaatgctttc 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||| | ||||||||||||||||||||||||    
T  1718665 agatgcagtgagaatacctgttggatggtggatagcccaagatccaaacccacctaagcctttcgttgggggagctttggcagcacttgacaatgctttc 1718566  T
Q  118 acatgggcacagtaagt 134  Q
    ||||||||| |||||||    
T  1718565 acatgggcatagtaagt 1718549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 7925489 - 7925375
Alignment:
Q  180 ctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggat 279  Q
    |||| |||||||||||||| |||| | ||||||| |||||||| |||| |  |||||||||||||| ||||||   |||| || |||||| ||||  |||    
T  7925489 ctataagtttctcgcgcgccctatgcggttcggaatatagaattcgaatggtataaacaccctata-aaaccttaaaaaatacgttgaaatatttcagat 7925391  T
Q  280 tttagaatctaaatag 295  Q
    ||||||||||||||||    
T  7925390 tttagaatctaaatag 7925375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 42110914 - 42111009
Alignment:
Q  164 tgtttctttttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaa 259  Q
    ||||||||||||||   || ||||||||||||||| |||| | | | |||||||||||| ||||||| |||||||||| ||| |||||||| ||||    
T  42110914 tgtttctttttccatcttacgagtttctcgcgcgccctatgcaggttggattatagaattcgaacgacataaacaccccataaaaacctccaaaaa 42111009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 15462182 - 15462096
Alignment:
Q  167 ttctttttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctc 253  Q
    |||||||||||  ||||||||||||||||| |  ||| | ||||| |||||||||||| ||||  |||||||||| ||| |||||||    
T  15462182 ttctttttccaacctatgagtttctcgcgctccttatgcagttcgaattatagaatccaaacggcataaacaccccataaaaacctc 15462096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 26665427 - 26665555
Alignment:
Q  167 ttctttttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattg 266  Q
    ||||||| ||||  |||||||||||||||||| |||| | ||| | |||||||||||||||||  ||||||| || ||| |||  ||  |||| |  |||    
T  26665427 ttcttttcccaccatatgagtttctcgcgcgccctatgcagtttgaattatagaatccgaacggcataaacaacccataaaaatttcggaaaacatgttg 26665526  T
Q  267 aaacattttggattttagaatctaaatag 295  Q
    ||| |||| |||||||| |||| ||||||    
T  26665527 aaatatttcggattttaaaatccaaatag 26665555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 33513327 - 33513449
Alignment:
Q  164 tgtttctttttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagaca 263  Q
    ||||||||||| ||| ||||||| ||||| ||||| |||||| ||||  ||| || ||||||||| |  |||| |||| ||| |||||||| |||| ||     
T  33513327 tgtttcttttttcaccctatgaggttctcacgcgccctatacagttcaaattttaaaatccgaactacgtaaaaaccc-ata-aaacctccgaaaacacg 33513424  T
Q  264 ttgaaacattttggattttagaatc 288  Q
    |||||| |||| |||||||||||||    
T  33513425 ttgaaatatttaggattttagaatc 33513449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 29389113 - 29389241
Alignment:
Q  167 ttctttttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattg 266  Q
    ||||||| |||| ||||||||||||||| ||  |||||| |||||||||||| |||||||||   |||||||||| ||| |||||| | |||| || |||    
T  29389113 ttcttttcccaccctatgagtttctcgcacgtcctatacagttcggattataaaatccgaacagcataaacacccaataaaaaccttcaaaaacacgttg 29389212  T
Q  267 aaacattttggattttagaatctaaatag 295  Q
    |||||||| |||||||| ||||| |||||    
T  29389213 aaacatttcggattttaaaatctgaatag 29389241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 29263808 - 29263890
Alignment:
Q  212 gattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggattttagaatctaaata 294  Q
    |||||||||||| |||||| |||||||||| ||| ||| || | |||| ||||||||||||||| ||||||| ||||| ||||    
T  29263808 gattatagaatctgaacgacataaacacccaataaaaatcttcaaaaacacattgaaacattttcgattttaaaatctgaata 29263890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 280
Target Start/End: Original strand, 30525786 - 30525886
Alignment:
Q  180 ctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggat 279  Q
    ||||||||||||||| ||| |||| |  || |||||||||||||||||||  ||||||| |  ||| |||||||| |||| || ||||||||||| ||||    
T  30525786 ctatgagtttctcgcacgccctatgcaatttggattatagaatccgaacggcataaacatctcataaaaacctccaaaaacacgttgaaacatttcggat 30525885  T
Q  280 t 280  Q
    |    
T  30525886 t 30525886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 9929427 - 9929327
Alignment:
Q  194 cgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggattttagaatctaaat 293  Q
    ||||| |||| | |||||||||||||||| ||||||  |||||||||  ||| |||||||| |||| || |||||| ||||  ||||||| |||||||||    
T  9929427 cgcgccctatgcagttcggattatagaattcgaacgtcataaacacctcataaaaacctcc-aaaacacgttgaaagatttcagattttaaaatctaaat 9929329  T
Q  294 ag 295  Q
    ||    
T  9929328 ag 9929327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 18075515 - 18075559
Alignment:
Q  207 gttcggattatagaatccgaacgaaataaacaccctatacaaacc 251  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||    
T  18075515 gttcggattatagaatctgaacgaaataaacaccccataaaaacc 18075559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 283
Target Start/End: Original strand, 31596486 - 31596597
Alignment:
Q  172 tttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaaca 271  Q
    |||||| ||||||||||| |||||||  |||||| |||  |||| ||||||  |||||  |||||||||| ||| || ||||| |||| || ||||||||    
T  31596486 tttccattctatgagtttttcgcgcgtcctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaaca 31596585  T
Q  272 ttttggatttta 283  Q
    |||  |||||||    
T  31596586 tttcagatttta 31596597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 290
Target Start/End: Complemental strand, 6359148 - 6359039
Alignment:
Q  181 tatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggatt 280  Q
    ||||||||||||| | ||  ||| | |||| ||||||||||| | || || || ||||| | ||| |||| ||| |||| || |||||| ||||||||||    
T  6359148 tatgagtttctcgtgtgccttatgcagttcagattatagaattcaaatgacattaacactccataaaaacatccaaaaatacgttgaaatattttggatt 6359049  T
Q  281 ttagaatcta 290  Q
    ||||||||||    
T  6359048 ttagaatcta 6359039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 14713980 - 14713919
Alignment:
Q  167 ttctttttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaac 228  Q
    |||||||||||  |||||||||||| ||  ||||||| | ||| ||||||||||||||||||    
T  14713980 ttctttttccatcctatgagtttcttgcttgctctatgcagtttggattatagaatccgaac 14713919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 33240804 - 33240926
Alignment:
Q  164 tgtttctttttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagaca 263  Q
    |||||||||| |||  |||| || ||||||| ||| |||||| ||| ||||| ||||||||||||   ||||| |||| ||| ||||||  | ||| ||     
T  33240804 tgtttcttttcccatcctataagcttctcgcacgccctatacagtttggattttagaatccgaactgtataaataccccataaaaacct--tcaaaaacg 33240901  T
Q  264 ttgaaacattttggattttagaatc 288  Q
    |||||| |||| |||||||||||||    
T  33240902 ttgaaatatttcggattttagaatc 33240926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 283
Target Start/End: Complemental strand, 2396851 - 2396756
Alignment:
Q  187 tttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggatttta 283  Q
    |||||| |||||| ||| | |||  ||||||||||| |||| || |||||||||||||| |||||| | |||| || || ||| |||||||||||||    
T  2396851 tttctcacgcgctttatgcagtttagattatagaattcgaatgacataaacaccctataaaaacctac-aaaatacgttaaaatattttggatttta 2396756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 288
Target Start/End: Original strand, 3255078 - 3255200
Alignment:
Q  165 gtttctttttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacat 264  Q
    ||||||||||| || |||||||||||||| | ||||||| | |||||||||||| |||| |||||  |||||||||| ||| |||||| | |||| | ||    
T  3255078 gtttctttttc-accctatgagtttctcgtgtgctctatgcagttcggattatataatcagaacggcataaacaccccataaaaaccttcaaaaatatat 3255176  T
Q  265 tgaaacattttggattttagaatc 288  Q
    ||||| ||||| ||||||||||||    
T  3255177 tgaaatattttagattttagaatc 3255200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 17298478 - 17298395
Alignment:
Q  212 gattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggattttagaatctaaatag 295  Q
    ||||||||||||| ||||  |||||||||||||| |||  | | |||| || || |||||||| ||| ||||||||||||||||    
T  17298478 gattatagaatccaaacggcataaacaccctatagaaatgttcaaaaacactttaaaacatttcggaatttagaatctaaatag 17298395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 44453743 - 44453696
Alignment:
Q  181 tatgagtttctcgcgcgctctatactgttcggattatagaatccgaac 228  Q
    |||||||||||| |||||||||||| ||||| ||| ||||||||||||    
T  44453743 tatgagtttctcacgcgctctatacagttcgcattttagaatccgaac 44453696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 3255238 - 3255204
Alignment:
Q  169 ctttttccactctatgagtttctcgcgcgctctat 203  Q
    ||||||| |||||||||||||||||||||||||||    
T  3255238 ctttttctactctatgagtttctcgcgcgctctat 3255204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 22713386 - 22713488
Alignment:
Q  181 tatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggatt 280  Q
    |||||||||||| ||| |||||||  |||  ||||||| |||||||| |  ||||||||||| || |||||||| |||| || |||||| ||||  ||||    
T  22713386 tatgagtttctcacgcactctatatagtttagattataaaatccgaatggcataaacaccctgtaaaaacctccaaaaacacgttgaaatatttcagatt 22713485  T
Q  281 tta 283  Q
    |||    
T  22713486 tta 22713488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 287
Target Start/End: Original strand, 35356363 - 35356441
Alignment:
Q  207 gttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggattttagaat 287  Q
    |||||||||||| |||||||||||  |||| |||| ||| |||||||| |||| || || |||||||| ||||||||||||    
T  35356363 gttcggattatataatccgaacgacgtaaa-accccataaaaacctcc-aaaacacgttaaaacatttcggattttagaat 35356441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 38088554 - 38088444
Alignment:
Q  20 atgcagtgagaatacctgttggatggtggatagctcaagatccaaatccacctaagccttttgttggaggatccttggcagcacttgacaatgctttcac 119  Q
    ||||||| ||||| || || || |||||||||||| | || ||||  || |||||||| ||||||||||||||||||  | ||||||||||||| |||||    
T  38088554 atgcagtcagaattcccgtggggtggtggatagctaaggacccaacaccccctaagccatttgttggaggatccttgaaaacacttgacaatgccttcac 38088455  T
Q  120 atgggcacagt 130  Q
    |||||||||||    
T  38088454 atgggcacagt 38088444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 13818888 - 13818775
Alignment:
Q  181 tatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggatt 280  Q
    ||||||||||||||||| |||||   |||||||||||||||||| |||   |||||||||| ||| ||||| || |||| || |||||| |||||| |||    
T  13818888 tatgagtttctcgcgcgttctatgtagttcggattatagaatccaaacttcataaacaccccatataaaccacc-aaaacacgttgaaatattttgaatt 13818790  T
Q  281 ttagaatctaaatag 295  Q
    ||| |||| ||||||    
T  13818789 ttaaaatccaaatag 13818775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 37507649 - 37507577
Alignment:
Q  214 ttatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggattttagaat 287  Q
    |||||||||| |||||| ||||| |||| ||| |||||||| |||| || ||||||||||| ||||||||||||    
T  37507649 ttatagaatctgaacgacataaataccccataaaaacctcc-aaaacacgttgaaacatttcggattttagaat 37507577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 27157622 - 27157745
Alignment:
Q  164 tgtttctttttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagaca 263  Q
    |||||||||| |||| |||| ||||| ||| |||| |||| |  |||||||||||||||||||| |  ||||| |||| ||| ||| |||| |||  ||     
T  27157622 tgtttcttttcccaccctatcagtttatcgtgcgccctatgcatttcggattatagaatccgaatggcataaataccccata-aaatctccaaaaccacg 27157720  T
Q  264 ttgaaacattttggattttagaatc 288  Q
    |||||| | || |||||||||||||    
T  27157721 ttgaaataattcggattttagaatc 27157745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 29026155 - 29026203
Alignment:
Q  180 ctatgagtttctcgcgcgctctatactgttcggattatagaatccgaac 228  Q
    |||| |||||||| |||| ||||||| || |||||||||||||||||||    
T  29026155 ctataagtttctcacgcgttctatacggtacggattatagaatccgaac 29026203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 40491819 - 40491707
Alignment:
Q  183 tgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggatttt 282  Q
    ||||||||||||| || ||| |  ||| |||||||||||||  ||||  |||||||||  ||| |||||||| |||| || |||||||||||||||||||    
T  40491819 tgagtttctcgcgtgccctacatagtttggattatagaatctaaacggcataaacacctcataaaaacctccaaaaacacgttgaaacattttggatttt 40491720  T
Q  283 agaatctaaatag 295  Q
    |||||| ||||||    
T  40491719 agaatccaaatag 40491707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 283
Target Start/End: Complemental strand, 22017768 - 22017653
Alignment:
Q  167 ttctttttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattg 266  Q
    ||||||| |||| |||||||||||| || ||  |||| | ||||||||||||||||||||| |  |||||||||| ||| |||||||| ||||  | |||    
T  22017768 ttcttttcccac-ctatgagtttcttgcacgtcctatgcagttcggattatagaatccgaatggcataaacaccccataaaaacctccaaaaacgcgttg 22017670  T
Q  267 aaacattttggatttta 283  Q
    ||||||||  |||||||    
T  22017669 aaacatttcagatttta 22017653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 14872707 - 14872627
Alignment:
Q  211 ggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggattttagaatctaaa 292  Q
    ||||| |||||||||||| | ||||| |||||||| |||||||  |||| || |||||| ||||||||||||||||| ||||    
T  14872707 ggattttagaatccgaactatataaaaaccctata-aaacctctaaaaacacgttgaaatattttggattttagaatttaaa 14872627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 22023719 - 22023823
Alignment:
Q  183 tgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggatttt 282  Q
    ||||||||||||||||  ||| || |||| |||||||||| | ||||  |||||||||||||| ||| |||| |||| |  ||||||||||| | ||||     
T  22023719 tgagtttctcgcgcgccatatgctattcgaattatagaattccaacggcataaacaccctataaaaagctccaaaaacatgttgaaacatttggaatttc 22023818  T
Q  283 agaat 287  Q
    |||||    
T  22023819 agaat 22023823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 35289186 - 35289243
Alignment:
Q  165 gtttctttttccactctatgagtttctcgcgcgctctatactgttcggattatagaat 222  Q
    ||||||||||| | | |||||||||||  ||| ||| |||||||||||||||||||||    
T  35289186 gtttctttttctattttatgagtttcttacgccctccatactgttcggattatagaat 35289243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 46940087 - 46939987
Alignment:
Q  187 tttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggattttagaa 286  Q
    |||||| ||||| |||||| |||||||||||||||||||||| | |||||||  ||||| | |||| | |||| | ||||||||||||  ||||||||||    
T  46940087 tttctcacgcgccctatacagttcggattatagaatccgaacaacataaacaatctataaagaccttcaaaaacatattgaaacatttcagattttagaa 46939988  T
Q  287 t 287  Q
    |    
T  46939987 t 46939987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 17339716 - 17339803
Alignment:
Q  207 gttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggattttagaatctaaatag 295  Q
    |||| |||||||||| ||||||||||||||| | ||||| |||||||| |||| ||||| ||| ||||  ||||||||||||| |||||    
T  17339716 gttcagattatagaacccgaacgaaataaactctctataaaaacctcc-aaaacacatttaaatatttcagattttagaatctgaatag 17339803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 2749180 - 2749261
Alignment:
Q  211 ggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggattttagaatctaaat 293  Q
    ||||||||||||||||||   |||||  ||| ||| |||||||| |||| |  ||||||||||| ||||||||||||||||||    
T  2749180 ggattatagaatccgaacaccataaatgccccataaaaacctcc-aaaacaagttgaaacatttcggattttagaatctaaat 2749261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 48401007 - 48400952
Alignment:
Q  232 ataaacaccctatacaaacctcctaaaagacattgaaacattttggattttagaatc 288  Q
    |||||||||||||| |||||||| |||| || || |||||||| |||||||||||||    
T  48401007 ataaacaccctataaaaacctcc-aaaacacgttaaaacatttcggattttagaatc 48400952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 7257525 - 7257646
Alignment:
Q  171 ttttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataa-acaccctatacaaacctcctaaaagacattgaaa 269  Q
    ||||||||  ||||||||||||  |||||||||   |||||||||||||||||| ||||| |||| || ||| ||| |||||||| |||| || | ||||    
T  7257525 ttttccaccttatgagtttctcatgcgctctatgtagttcggattatagaatccaaacgacataatacccccaata-aaacctcc-aaaacacgtcgaaa 7257622  T
Q  270 cattttggattttagaatctaaat 293  Q
    ||||| ||||||||||||||||||    
T  7257623 catttcggattttagaatctaaat 7257646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 283
Target Start/End: Complemental strand, 38303416 - 38303297
Alignment:
Q  164 tgtttctttttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagaca 263  Q
    ||||||||||| |||  |||||||||||| |||| |||||   |||||||||||||||| | ||||  ||||| |   |||| |||||||| ||||  ||    
T  38303416 tgtttcttttttcacattatgagtttctcacgcgttctatgaagttcggattatagaatacaaacggcataaatattgtataaaaacctccaaaaacgca 38303317  T
Q  264 ttgaaacattttggatttta 283  Q
    |||||||||||  |||||||    
T  38303316 ttgaaacatttcagatttta 38303297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 12311922 - 12311889
Alignment:
Q  207 gttcggattatagaatccgaacgaaataaacacc 240  Q
    ||||||||||||||||||||||| ||||||||||    
T  12311922 gttcggattatagaatccgaacggaataaacacc 12311889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 288
Target Start/End: Complemental strand, 45203345 - 45203224
Alignment:
Q  166 tttctttttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacatt 265  Q
    ||||||||| ||| ||||||||||||| ||||  |||| | ||||| ||| |||||||||||| | ||||| | || ||| |||||||  |||| |||||    
T  45203345 tttcttttttcaccctatgagtttctcacgcgtcctatgccgttcgaattttagaatccgaactacataaaaatcccata-aaacctcgaaaaacacatt 45203247  T
Q  266 gaaacattttggattttagaatc 288  Q
    |||| |||| |||||||||||||    
T  45203246 gaaatatttcggattttagaatc 45203224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 43050232 - 43050152
Alignment:
Q  207 gttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggattttagaatc 288  Q
    |||||||||||||||||| ||||| ||||| ||||| || |||||||| |||| || |||||||||||  ||||||| ||||    
T  43050232 gttcggattatagaatccaaacgacataaataccctgtaaaaacctcc-aaaacacgttgaaacatttcagattttaaaatc 43050152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 38308073 - 38308143
Alignment:
Q  213 attatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggatttta 283  Q
    |||||||||||||||||  |||||||||||||| |||| | | |||| || |||||||||||  |||||||    
T  38308073 attatagaatccgaacggcataaacaccctataaaaactttcaaaaacacgttgaaacatttcagatttta 38308143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 280
Target Start/End: Complemental strand, 6526 - 6453
Alignment:
Q  207 gttcggattatagaatccgaacgaaataaacaccctatacaaacctcctaaaagacattgaaacattttggatt 280  Q
    |||||||||||||||||||||||| |||||| ||  ||| |||||||  |||| || |||||||||||||||||    
T  6526 gttcggattatagaatccgaacgacataaacccctcataaaaacctctaaaaatacgttgaaacattttggatt 6453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 253
Target Start/End: Original strand, 10 - 96
Alignment:
Q  167 ttctttttccactctatgagtttctcgcgcgctctatactgttcggattatagaatccgaacgaaataaacaccctatacaaacctc 253  Q
    |||||||||||  ||||||||||||||||| |  ||| | ||||| |||||||||||| ||||  |||||||||| ||| |||||||    
T  10 ttctttttccaacctatgagtttctcgcgctccttatgcagttcgaattatagaatccaaacggcataaacaccccataaaaacctc 96  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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