View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19030_low_17 (Length: 297)
Name: NF19030_low_17
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19030_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 278
Target Start/End: Complemental strand, 673675 - 673405
Alignment:
| Q |
8 |
cgaagaaaatcaaccaaaactttaatgaatcttttagattggtcagtttcaagatcatacatgtaataaacatgatcctcatctttctcttcaaagaatt |
107 |
Q |
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| T |
673675 |
cgaagaaaatcaaccaaaactttaatgaatcttttagattggtcagtttcaagatcatacatgtaataaacatgatcctcatctttctcttcaaagaatt |
673576 |
T |
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| Q |
108 |
ccacttcccctttccatccactcttcttcacagcctcataatatctttctgatctgtccctaaagagaagatgatcctttccagcagcagtaataagcat |
207 |
Q |
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| T |
673575 |
ccacttcccctttccatccactcttcttcacagcctcaaaatatctttctgatctgtccctaaagagaagttgatcctttccagcagcagtaataagcat |
673476 |
T |
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| Q |
208 |
cttggaacaaccaagtgtagccaaactaggtgccccagaagccaatggattgatcatagcgttatctaacc |
278 |
Q |
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| T |
673475 |
cctggaacaaccaagtgtagccaaactaggtgccccagaagccaatggattgatcatagggttatctaacc |
673405 |
T |
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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 15233733 - 15233799
Alignment:
| Q |
73 |
ataaacatgatcctcatctttctcttcaaagaattccacttcccctttccatccactcttcttcaca |
139 |
Q |
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| T |
15233733 |
ataaacatgaccctcatctttctcttcaaagaattccaatttccctttccacccactattcttcaca |
15233799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 47301937 - 47301860
Alignment:
| Q |
73 |
ataaacatgatcctcatctttctcttcaaagaattccacttcccctttccatccactcttcttcacagcctcataata |
150 |
Q |
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| T |
47301937 |
ataaacatgatcttcatcttcttcttcaaacaattccaatttccctttccaaccactcttcttcacaagctcataata |
47301860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 17473799 - 17473733
Alignment:
| Q |
73 |
ataaacatgatcctcatctttctcttcaaagaattccacttcccctttccatccactcttcttcaca |
139 |
Q |
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||||||||| | |||||||||||||||||||||||||| || ||| ||||| ||||| ||||||||| |
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| T |
17473799 |
ataaacatggttctcatctttctcttcaaagaattccaatttcccattccacccactattcttcaca |
17473733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 17842074 - 17841997
Alignment:
| Q |
73 |
ataaacatgatcctcatctttctcttcaaagaattccacttcccctttccatccactcttcttcacagcctcataata |
150 |
Q |
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||||||||| || |||| || |||||||| ||||||| || ||||||||| ||||||||||||||| ||||||||| |
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| T |
17842074 |
ataaacatggtcttcattttcttcttcaaacaattccaatttccctttccaaccactcttcttcacaagctcataata |
17841997 |
T |
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