View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19030_low_2 (Length: 752)

Name: NF19030_low_2
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19030_low_2
NF19030_low_2
[»] chr6 (3 HSPs)
chr6 (1-737)||(10978568-10979304)
chr6 (55-103)||(2879135-2879183)
chr6 (62-105)||(22569946-22569989)
[»] chr3 (9 HSPs)
chr3 (228-417)||(31286224-31286412)
chr3 (62-108)||(8765763-8765809)
chr3 (62-108)||(8770653-8770699)
chr3 (228-301)||(26484782-26484855)
chr3 (58-105)||(13938804-13938851)
chr3 (62-105)||(16223573-16223616)
chr3 (62-109)||(52935495-52935542)
chr3 (57-106)||(5632667-5632716)
chr3 (56-101)||(8145344-8145389)
[»] chr4 (5 HSPs)
chr4 (257-417)||(19217927-19218087)
chr4 (62-109)||(11782580-11782627)
chr4 (55-97)||(38656512-38656554)
chr4 (58-103)||(12286828-12286873)
chr4 (22-103)||(26117229-26117310)
[»] chr5 (4 HSPs)
chr5 (224-317)||(18608810-18608903)
chr5 (49-105)||(12029501-12029557)
chr5 (62-105)||(20860431-20860474)
chr5 (62-105)||(31600037-31600080)
[»] chr2 (7 HSPs)
chr2 (217-341)||(34077040-34077164)
chr2 (49-104)||(39730328-39730383)
chr2 (49-106)||(31449838-31449895)
chr2 (258-306)||(29862290-29862338)
chr2 (58-109)||(27907480-27907531)
chr2 (258-304)||(22115397-22115443)
chr2 (260-301)||(28413963-28414004)
[»] chr7 (6 HSPs)
chr7 (58-105)||(12865302-12865349)
chr7 (55-103)||(23689345-23689393)
chr7 (62-105)||(39270235-39270278)
chr7 (63-105)||(2506783-2506825)
chr7 (56-106)||(16536750-16536800)
chr7 (56-106)||(16628862-16628912)
[»] chr1 (2 HSPs)
chr1 (58-105)||(22624834-22624881)
chr1 (49-102)||(31313433-31313486)
[»] scaffold0210 (1 HSPs)
scaffold0210 (55-103)||(25216-25264)
[»] scaffold0049 (1 HSPs)
scaffold0049 (55-103)||(39612-39660)
[»] chr8 (2 HSPs)
chr8 (69-109)||(18446828-18446868)
chr8 (62-105)||(29765353-29765396)
[»] scaffold0282 (1 HSPs)
scaffold0282 (49-108)||(22720-22779)
[»] scaffold0072 (1 HSPs)
scaffold0072 (62-105)||(38383-38426)
[»] scaffold0043 (1 HSPs)
scaffold0043 (62-105)||(88398-88441)
[»] scaffold0386 (1 HSPs)
scaffold0386 (605-646)||(8325-8366)


Alignment Details
Target: chr6 (Bit Score: 693; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 1 - 737
Target Start/End: Original strand, 10978568 - 10979304
Alignment:
Q  1 aacccatatggaaacgtatgccatctaaatattaatgcaaattaagaattcttcctattttgttacttgaggacaaacaaccttttaagtttggggttgt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||    
T  10978568 aacccatatggaaatgtatgccatctaaatattaatgcaaattaagaattctttctattttgttacttgagggcaaacaaccttttaagcttggggttgt 10978667  T
Q  101 gatgataggatatttagctatgttttttagtcatttatttagagtctgaggtcatgctacaaatgttttagaggagattatcatggtttaagggatacat 200  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978668 gataataggatatttagctacgttttttagtcatttatttagagtctgaggtcatgctacaaatgttttagaggagattatcatggtttaagggatacat 10978767  T
Q  201 tgtattgtttttcaattaagtcatttaagtctttttagtgagaaattatgaaatttggcaaatcaagacattacattgagttatgaaggcaagagaatga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978768 tgtattgtttttcaattaagtcatttaagtctttttagtgagaaattatgaaatttggcaaatcaagacattacattgagttatgaaggcaagagaatga 10978867  T
Q  301 agataagtggagctcaaggaggtttttaaagacaaaacaattttgaaaaatcatgtccccagtcccaagatcatagcatggaaaagaagactctaagaac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978868 agataagtggagctcaaggaggtttttaaagacaaaacaattttgaaaaatcatgtccccagtcccaagatcatagcatggaaaagaagactctaagaac 10978967  T
Q  401 gaagaaaaatgacatttccgcatttttgacgaagccatccgccacaggaatgccccatgtccctcaggcgcatggtagtgctagacggtatcaaacccct 500  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10978968 gaagaaaaatgacatttccgcatttttgacgaagccatgcgccataggaatgccccatgtccctcaggcgcatggtagtgctagacggtataaaacccct 10979067  T
Q  501 tccccatgctccccgacacatggttgcaagtaaaattttccatttcctcgtttttcaagctagattagtggaaaaaacgcgtaaacccattacaaaaact 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979068 tccccatgctccccgacacatggttgcaagtaaaattttccatttcctcgtttttcaagctagattagtggaaaaaacgcgtaaacccattacaaaaact 10979167  T
Q  601 ttcttataaatagagacccttgcatacatttttatttatttagaaacttggtgatacaaagtgaaggcatgcatcaagcagcaacaagaagaatatcacc 700  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10979168 ttcttataaatagagacccttgcatacatttttattcatttagaaacttggtggtacaaagtgaaggcatgcatcaagcagcaacaagaagaatatcacc 10979267  T
Q  701 ctttctttgtttcaagagtatgcttgtatttcttcct 737  Q
    |||||||||||||||||||||||||||||||||||||    
T  10979268 ctttctttgtttcaagagtatgcttgtatttcttcct 10979304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 2879135 - 2879183
Alignment:
Q  55 ctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 103  Q
    |||||||||||||||||||||| |||| | |||||||||||||||||||    
T  2879135 ctattttgttacttgaggacaagcaacatattaagtttggggttgtgat 2879183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 22569989 - 22569946
Alignment:
Q  62 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 105  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  22569989 gttacttgaggacaaacaacaatttaagtttggggttgtgatga 22569946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 228 - 417
Target Start/End: Complemental strand, 31286412 - 31286224
Alignment:
Q  228 agtctttttagtgagaaattatgaaatttggcaaatcaagacattacattgagttatgaaggcaagagaatgaagataagtggagctcaaggaggttttt 327  Q
    |||| ||||||| |||||||||| |||| |||||||||| | |   | |||||||||| ||| || ||||||||||| | ||||| ||||  ||| ||||    
T  31286412 agtcattttagtaagaaattatgtaattcggcaaatcaaaatag--cgttgagttatggaggaaaaagaatgaagatcaatggagttcaataaggatttt 31286315  T
Q  328 aaagacaaaacaattttgaaaaatcatgtccccagtcccaagatcatagcatggaa-aagaagactctaagaacgaagaaaaatgacattt 417  Q
    |||||||| ||||| | ||||||| || |||| ||| |||| || | ||||||||| ||||  |||| |||||| ||||||||||||||||    
T  31286314 aaagacaatacaatgtggaaaaataatatcccaagttccaaaataaaagcatggaagaagaccactcaaagaacaaagaaaaatgacattt 31286224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 8765809 - 8765763
Alignment:
Q  62 gttacttgaggacaaacaaccttttaagtttggggttgtgatgatag 108  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  8765809 gttacttcaggacaagcaaccgtttaagtttggggttgtgatgatag 8765763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 8770699 - 8770653
Alignment:
Q  62 gttacttgaggacaaacaaccttttaagtttggggttgtgatgatag 108  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  8770699 gttacttcaggacaagcaaccgtttaagtttggggttgtgatgatag 8770653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 26484782 - 26484855
Alignment:
Q  228 agtctttttagtgagaaattatgaaatttggcaaatcaagacattacattgagttatgaaggcaagagaatgaa 301  Q
    |||| |||| |||| |||| ||| || | ||||||||||||||| |||| |||||||| |||||||||||||||    
T  26484782 agtcattttggtgataaatcatgtaaatcggcaaatcaagacatcacatggagttatgcaggcaagagaatgaa 26484855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 13938804 - 13938851
Alignment:
Q  58 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 105  Q
    |||||||| || ||||||||||||  ||||||||||||||||||||||    
T  13938804 ttttgttatttcaggacaaacaacagtttaagtttggggttgtgatga 13938851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 16223616 - 16223573
Alignment:
Q  62 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 105  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  16223616 gttacttgaggacaagcaacaatttaagtttggggttgtgatga 16223573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 52935495 - 52935542
Alignment:
Q  62 gttacttgaggacaaacaaccttttaagtttggggttgtgatgatagg 109  Q
    ||||||||||||||| ||||  ||||| ||||||||||||||||||||    
T  52935495 gttacttgaggacaatcaacaatttaaatttggggttgtgatgatagg 52935542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 5632716 - 5632667
Alignment:
Q  57 attttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 106  Q
    |||||||| |||| |||||| ||||  |||||||||||||||||||||||    
T  5632716 attttgttgcttggggacaagcaacggtttaagtttggggttgtgatgat 5632667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 8145389 - 8145344
Alignment:
Q  56 tattttgttacttgaggacaaacaaccttttaagtttggggttgtg 101  Q
    ||||| ||||||||||||||| ||||  ||||||||||||||||||    
T  8145389 tatttagttacttgaggacaagcaacaatttaagtttggggttgtg 8145344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 257 - 417
Target Start/End: Original strand, 19217927 - 19218087
Alignment:
Q  257 ggcaaatcaagacattacattgagttatgaaggcaagagaatgaagataagtggagctcaaggaggtttttaaagacaaaacaattttgaaaaatcatgt 356  Q
    ||||||||||||||| || | |||||||| |||||||||||||||||| |  |||| ||||| |||||||| ||| ||| ||||| | | ||||| |  |    
T  19217927 ggcaaatcaagacatcacgtggagttatggaggcaagagaatgaagatcaaaggagttcaagaaggtttttgaaggcaatacaatgtgggaaaataacat 19218026  T
Q  357 ccccagtcccaagatcatagcatggaaaagaagactctaagaacgaagaaaaatgacattt 417  Q
    | | ||||||||||| | | ||| |||||||  |||| || ||||||||||||| ||||||    
T  19218027 ctcaagtcccaagatgacaacatagaaaagatcactcaaaaaacgaagaaaaataacattt 19218087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 11782627 - 11782580
Alignment:
Q  62 gttacttgaggacaaacaaccttttaagtttggggttgtgatgatagg 109  Q
    ||||||||||||||| || | |||||||||||||||||||||||||||    
T  11782627 gttacttgaggacaagcaccattttaagtttggggttgtgatgatagg 11782580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 38656512 - 38656554
Alignment:
Q  55 ctattttgttacttgaggacaaacaaccttttaagtttggggt 97  Q
    |||||||||||||||||||| ||||||  ||||||||||||||    
T  38656512 ctattttgttacttgaggacgaacaacaatttaagtttggggt 38656554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 12286873 - 12286828
Alignment:
Q  58 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgat 103  Q
    |||||||| |||||||||||||||  |||| |||||||||||||||    
T  12286873 ttttgttatttgaggacaaacaacggtttatgtttggggttgtgat 12286828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 26117229 - 26117310
Alignment:
Q  22 catctaaatattaatgcaaattaagaattcttcctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 103  Q
    |||||||| |||  ||||||||| || || || |||||||||||||| | |||||||||   ||||||||||||||| ||||    
T  26117229 catctaaaaatttgtgcaaattacgacttattgctattttgttacttaatgacaaacaatagtttaagtttggggttctgat 26117310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 224 - 317
Target Start/End: Original strand, 18608810 - 18608903
Alignment:
Q  224 tttaagtctttttagtgagaaattatgaaatttggcaaatcaagacattacattgagttatgaaggcaagagaatgaagataagtggagctcaa 317  Q
    |||||| | ||||||||||||||  || |  | ||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||| ||||    
T  18608810 tttaagccattttagtgagaaatcgtgtaggtcggcaaatcaagacatcacatggagttatgaaggcaagagaatgaagatcaatggagttcaa 18608903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 12029501 - 12029557
Alignment:
Q  49 ttcttcctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 105  Q
    ||||| ||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  12029501 ttctttctattttgttacttgaggacaaaaaatattttaagtttggggttgtgatga 12029557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 20860474 - 20860431
Alignment:
Q  62 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 105  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  20860474 gttacttgaggacaagcaacagtttaagtttggggttgtgatga 20860431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 31600037 - 31600080
Alignment:
Q  62 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 105  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||    
T  31600037 gttacttgatgacaagcaaccatttaagtttggggttgtgatga 31600080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 217 - 341
Target Start/End: Original strand, 34077040 - 34077164
Alignment:
Q  217 taagtcatttaagtctttttagtgagaaattatgaaatttggcaaatcaagacattacattgagttatgaaggcaagagaatgaagataagtggagctca 316  Q
    |||||| ||| |||| |||||||||||||| ||| ||||||||||| |||||||| |||| || ||||  |  |||||||||||||||   ||||||||     
T  34077040 taagtcttttgagtcattttagtgagaaatcatgtaatttggcaaaccaagacatcacatggaattatagaaccaagagaatgaagatccatggagctcg 34077139  T
Q  317 aggaggtttttaaagacaaaacaat 341  Q
    || | |||||| ||||||| |||||    
T  34077140 agaaagtttttgaagacaatacaat 34077164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 39730328 - 39730383
Alignment:
Q  49 ttcttcctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatg 104  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||    
T  39730328 ttcttgctattttgttgcttgaggacaaataacattttaagtttggggttgtgatg 39730383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 31449838 - 31449895
Alignment:
Q  49 ttcttcctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 106  Q
    ||||| ||| |||||||||||||||||| ||||  |||||||||||||||||||||||    
T  31449838 ttcttgctaatttgttacttgaggacaagcaacagtttaagtttggggttgtgatgat 31449895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 29862338 - 29862290
Alignment:
Q  258 gcaaatcaagacattacattgagttatgaaggcaagagaatgaagataa 306  Q
    |||||||||||||| |||| |||||||| ||| ||||||||||||||||    
T  29862338 gcaaatcaagacatcacatagagttatggaggaaagagaatgaagataa 29862290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 27907480 - 27907531
Alignment:
Q  58 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgatgatagg 109  Q
    ||||||||||||||||||| ||||  |||||  |||||||||||||||||||    
T  27907480 ttttgttacttgaggacaagcaacaatttaaaattggggttgtgatgatagg 27907531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 22115443 - 22115397
Alignment:
Q  258 gcaaatcaagacattacattgagttatgaaggcaagagaatgaagat 304  Q
    |||||||||||||| |||| |||||||| |||||||| |||||||||    
T  22115443 gcaaatcaagacatcacatagagttatgtaggcaagataatgaagat 22115397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 28413963 - 28414004
Alignment:
Q  260 aaatcaagacattacattgagttatgaaggcaagagaatgaa 301  Q
    |||||||||||| |||| |||||||| |||||||||||||||    
T  28413963 aaatcaagacatcacatagagttatggaggcaagagaatgaa 28414004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 12865349 - 12865302
Alignment:
Q  58 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 105  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  12865349 ttttgttacttgaggacaaacaaccgtttaagttttgggttgtgatga 12865302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 23689393 - 23689345
Alignment:
Q  55 ctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 103  Q
    |||||||||||||||||||||  |||| | |||||||||||||||||||    
T  23689393 ctattttgttacttgaggacatgcaacatattaagtttggggttgtgat 23689345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 39270235 - 39270278
Alignment:
Q  62 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 105  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  39270235 gttacttgaggacaagcaacaatttaagtttggggttgtgatga 39270278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 2506783 - 2506825
Alignment:
Q  63 ttacttgaggacaaacaaccttttaagtttggggttgtgatga 105  Q
    |||||||||||||| ||||  ||||||||||||||||||||||    
T  2506783 ttacttgaggacaagcaactatttaagtttggggttgtgatga 2506825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 16536800 - 16536750
Alignment:
Q  56 tattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 106  Q
    ||||||||| ||||||||||||||||  |||||||||  ||||||||||||    
T  16536800 tattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgat 16536750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 16628862 - 16628912
Alignment:
Q  56 tattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 106  Q
    ||||||||| ||||||||||||||||  |||||||||  ||||||||||||    
T  16628862 tattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgat 16628912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 22624834 - 22624881
Alignment:
Q  58 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 105  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  22624834 ttttgttacttgaggacaagcaaccgtttaagtttggggttgtgatga 22624881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 31313433 - 31313486
Alignment:
Q  49 ttcttcctattttgttacttgaggacaaacaaccttttaagtttggggttgtga 102  Q
    ||||| |||||||||| | ||||||||| ||||  |||||||||||||||||||    
T  31313433 ttcttgctattttgttgcctgaggacaagcaacagtttaagtttggggttgtga 31313486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 25264 - 25216
Alignment:
Q  55 ctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 103  Q
    |||||||||||||||||||||| |||| | |||||||||||||||||||    
T  25264 ctattttgttacttgaggacaagcaacatattaagtttggggttgtgat 25216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 39660 - 39612
Alignment:
Q  55 ctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 103  Q
    |||||||||| ||||||||||| |||| | |||||||||||||||||||    
T  39660 ctattttgttccttgaggacaagcaacatattaagtttggggttgtgat 39612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 18446828 - 18446868
Alignment:
Q  69 gaggacaaacaaccttttaagtttggggttgtgatgatagg 109  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  18446828 gaggacaagcaacattttaagtttggggttgtgatgatagg 18446868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 29765353 - 29765396
Alignment:
Q  62 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 105  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  29765353 gttacttgaggacaagcaacaatttaagtttggggttgtgatga 29765396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 22779 - 22720
Alignment:
Q  49 ttcttcctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgatag 108  Q
    ||||| ||||| |||| ||||||| ||| ||||  |||||||||||||||||||||||||    
T  22779 ttcttgctattgtgttgcttgagggcaagcaacactttaagtttggggttgtgatgatag 22720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 38426 - 38383
Alignment:
Q  62 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 105  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  38426 gttacttgaggacaagcaacaatttaagtttggggttgtgatga 38383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 88398 - 88441
Alignment:
Q  62 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 105  Q
    |||| |||||||||||||||  ||||||||||||||||||||||    
T  88398 gttaattgaggacaaacaacaatttaagtttggggttgtgatga 88441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 646
Target Start/End: Complemental strand, 8366 - 8325
Alignment:
Q  605 tataaatagagacccttgcatacatttttatttatttagaaa 646  Q
    |||||||||||||||||||| ||||||||||| ||| |||||    
T  8366 tataaatagagacccttgcagacatttttattcattcagaaa 8325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University