View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19030_low_21 (Length: 226)
Name: NF19030_low_21
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19030_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 280333 - 280140
Alignment:
| Q |
19 |
aaattataccaccgattaatcaagaacaacaatcatatctaagaaatca-taaacatgacataaatgaatgtccacttcattaactgaaattacaatctc |
117 |
Q |
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| T |
280333 |
aaattataccaccgattaatcaagaacaacaatcatatctaagaaatcactaaacatgacataaatggatgtccacttcattaactgaaattacaatctc |
280234 |
T |
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| Q |
118 |
tatgtatcccctaaatcatacctaagtttgatttttctgactaactttccaattaacatttgtccattggaagttcatgaagccaccatctctg |
211 |
Q |
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| T |
280233 |
tatgtatcccttaaatcatacctaagtttgatttttctgactaactttccaattaacatttgtccattggaagttcatgaagccaccatctctg |
280140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 265916 - 265796
Alignment:
| Q |
19 |
aaattataccaccgattaatcaagaacaacaatcatatctaagaaatca-taaacatgacataaatgaatgtccacttcattaactgaaattacaatctc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
265916 |
aaattataccaccgattaatcaagaacaacaatcatgtctaagaaaacactaaacatgacataaatgaatgttcacttcattaactgaaattacaatctc |
265817 |
T |
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| Q |
118 |
tatgtatcccctaaatcatac |
138 |
Q |
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| |||| |||| |||| |||| |
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| T |
265816 |
tctgtaccccccaaattatac |
265796 |
T |
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