View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19030_low_23 (Length: 223)
Name: NF19030_low_23
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19030_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 41081383 - 41081199
Alignment:
| Q |
19 |
attgaaaggacgtgtaaattgagnnnnnnnccctttctcttttgcatcaattaatgcaatcttagttgaacattaatatagctagcaactctctcaatta |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41081383 |
attgaaaggacgtgtaaattgagtttttttccctttctcttttgcatcaattaatgcaatcttagttgaacattaatatagc----aactctctcaatta |
41081288 |
T |
|
| Q |
119 |
aattttttaactttaatatacatttaatttgttaaaaatcagtactttacagaaaacccttaatttgtcatagtgcaagagtttacttc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41081287 |
aattttttaactttaatatacatttaatttgttaaaaatcagtactttacagaaaacccttaatttgtcatagtgcaagagtttacttc |
41081199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University