View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19030_low_26 (Length: 211)
Name: NF19030_low_26
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19030_low_26 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 53617818 - 53618028
Alignment:
| Q |
1 |
cacatcttcaatagagatctaataccggatgatagtttctaatttttcttgcattgatgttgaatagtacctaatagaaacatgttgatttcttatataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53617818 |
cacatcttcaatagagatctaatacctgatgatagtttctaatttttctagcattgatgttgaatagtacctaatagaaacatgttgatttcttatataa |
53617917 |
T |
|
| Q |
101 |
gctaatatctagattgcaatgttgtaaaattaagaacaactaaaaacagtttctgattttttctagcattgatgttgagtgtcatgtcaataatatgtaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53617918 |
gctaatatctagattgcaatgttgtaaaattaagaacaactaaaaacagtttctgattttttctagcattgatgttgagcgtcatgtcaataatatgtaa |
53618017 |
T |
|
| Q |
201 |
gtagagtttct |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
53618018 |
gtagagtttct |
53618028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 14344571 - 14344623
Alignment:
| Q |
158 |
tttttctagcattgatgttgagtgtcatgtcaataatatgtaagtagagtttc |
210 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||||||||||||||||||||||| |
|
|
| T |
14344571 |
tttttctagcattgatgtcgagtggcatggcaataatatgtaagtagagtttc |
14344623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 50422409 - 50422340
Alignment:
| Q |
134 |
gaacaactaaaaacagtttctgattttttctagcattgatgttgagtgtcatgtcaataatatgtaagta |
203 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
50422409 |
gaacaactaaaggtagtttttgatttgttctagcattggagttgagtagcatggcaataatatgtaagta |
50422340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University