View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19030_low_4 (Length: 678)
Name: NF19030_low_4
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19030_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 27771459 - 27771086
Alignment:
| Q |
1 |
tagtagagttgattcaaaggcgccttcattgcgcgcttttagtgatttgtgtaatttgcaaggaagagaaagaataatcgaaattagagacgaagtttgt |
100 |
Q |
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|||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27771459 |
tagtagagttgagtcgaaggcgccatcattgcgcgcttttagtgatttgtgtaatttgcaaggaagagaaagaataatcgaaattagagacgaagtttgt |
27771360 |
T |
|
| Q |
101 |
gaatcgatcggaaggtcagtgtctatggatcattcatttcaaaatggtttttcaattggtgatgtgttgaatatgaatgaagatgaagatgattcttgtg |
200 |
Q |
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| T |
27771359 |
gaatcgatcggaaggtcagtgtctatggatcattcatttcaaaatggtttttcaattggtgatgtgttgaatatgaatgaagatgaagatgattcttgtg |
27771260 |
T |
|
| Q |
201 |
aagaaggatgttcaatggatgttagttcatcaaagatatcacaaggagaaagtagtaaatcaaggtacaaaagaagagtgttgcattgtgttatgagtcc |
300 |
Q |
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| T |
27771259 |
aagaaggatgttcaatggatgttagttcatcaaagatatcacaaggagaaagtagtaaatcaaggtacaaaagaagagtgttgcattgtgttatgagtcc |
27771160 |
T |
|
| Q |
301 |
aattgcaatgaagagatcgttttctaatggaagattttcactaggtaaaattgatagaggaaaaaggcaaggaa |
374 |
Q |
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| T |
27771159 |
aattgcaatgaagagatcgttttctaatggaagattttcacttggtaaaattgatagaggaaaaaggcaaggaa |
27771086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 542 - 662
Target Start/End: Complemental strand, 27770908 - 27770788
Alignment:
| Q |
542 |
aaatatgtatatgttatttatgcaatttggatccctgaattaatgggatcaagattctttgcaggaaggatatcttgaattcatttattcaagatatagt |
641 |
Q |
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| T |
27770908 |
aaatatgtatatgttatttatgcaatttggatccctgaattaatgggatcaagattctttgcaggaaggatatcttgaattcatttattcaagatatagt |
27770809 |
T |
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| Q |
642 |
tgatagttgggcggtttagat |
662 |
Q |
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| T |
27770808 |
tgatagttgggcggtttagat |
27770788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 423 - 474
Target Start/End: Complemental strand, 27771038 - 27770987
Alignment:
| Q |
423 |
atgatatattaagaagagagatagaccaattttttgtgtgaagattgcataa |
474 |
Q |
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| T |
27771038 |
atgatatattaagaagagagacagaccaattttttgtgtgaagattgcataa |
27770987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 12617343 - 12617286
Alignment:
| Q |
281 |
ttgcattgtgttatgagtccaattgcaatgaagagatcgttttctaatggaagatttt |
338 |
Q |
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||||||||||| | ||||||||||||||||||||||| ||||| | ||||||||||| |
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| T |
12617343 |
ttgcattgtgtgctaagtccaattgcaatgaagagatcattttcaagtggaagatttt |
12617286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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