View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19030_low_6 (Length: 629)
Name: NF19030_low_6
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19030_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Original strand, 44826880 - 44827496
Alignment:
| Q |
1 |
aacttcttagatttgctctttcttgacatcgaccttgactttgatggcatctcattgtcctagcaaaataactcattcaaaaacaatttgacgatctttg |
100 |
Q |
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| T |
44826880 |
aacttcttagatttgctctttcttgacatcgaccttgactttgatggcatctcattgtcctagcaaaataactcattcaaaaacaatttgacaatctttg |
44826979 |
T |
|
| Q |
101 |
agtatgcataaatgttgtcaaagttgttt-gnnnnnnnnttgaaaaattatattcaagttgccaaagtcatatacgagagagaaagtctctttgatggta |
199 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44826980 |
agtatgcataaatgttgtcaaagttgttttgaaaaaaaattgaaaaattatattcaagttgccaaagtcatatacgagagagaaagtctctttgatggta |
44827079 |
T |
|
| Q |
200 |
gtttgaggatggggatcatacctgagaataacattaaaattatgtagatatattcaaatgttttacatgttatatttgtttatctgttcacacaacatgc |
299 |
Q |
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| T |
44827080 |
gtttgaggatggggatcatacctgagaataacattaaaaatatgtagatatattcaaatgttttacatgttatatttgtttatctattcacacaacatgc |
44827179 |
T |
|
| Q |
300 |
ggataaatttattttacattaagtttactaatgctacaagactcattatcttgctttttcgtttgtttgatggtaaaattttttgactaccaattttaat |
399 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44827180 |
ggataaatttattttacattaagtttactgatgctacaagactcattatcttgctttttcgtttgtttgatggttaaattttttgactaccaattttaat |
44827279 |
T |
|
| Q |
400 |
caaaataatataaatttgattatgttgacctggtccacacaagaataaggacatggagaaaaaactcttaaaaataaggaatgatgaacattttgaatga |
499 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44827280 |
caaaataatagaaatttgatcatgttgacctggtccacacgagaataaggacatggagaaaaaactcttaaaaataaggaatgatgaacattttgaatga |
44827379 |
T |
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| Q |
500 |
catagatggggagcggagagtactccccatcccgcctcgttgacgtctccaattccaccacatctcatatatataactttcacctcatactaatcaaaca |
599 |
Q |
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| T |
44827380 |
catagatggggagcggagagtactccccatcccgcctcgttgacgtcttcaattccaccacatctcatatatataactttcacctcatactaatcaaaca |
44827479 |
T |
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| Q |
600 |
ctcctataaaatatgat |
616 |
Q |
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||||||||||||||||| |
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| T |
44827480 |
ctcctataaaatatgat |
44827496 |
T |
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