View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19030_low_7 (Length: 594)
Name: NF19030_low_7
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19030_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 275 - 584
Target Start/End: Original strand, 1962277 - 1962581
Alignment:
| Q |
275 |
agatacacttggtgcccgttttgttcttcccaacatgtgtggctcttattcattcgttttgaaacttctcaaacatatacataatgttgattttgcagaa |
374 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962277 |
agatacacttggtgcctgttttgttcttcccaacatgtgtggctcttattcattcgttttgaaacttctcaaacatatacataatgttgattttgcagaa |
1962376 |
T |
|
| Q |
375 |
catgtataggtagttgagttgagttctgtttttggttttcctttcacaagcatnnnnnnntattaacttataagctgtaaactaagaacaaattttcatg |
474 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1962377 |
catgtataggtagttgagtt-----ctgtttttggttttcctttcacaagcataaaaaaatattaacttataagctgtaaactaagaacaaattttcatg |
1962471 |
T |
|
| Q |
475 |
gagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatccatact |
574 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962472 |
gagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatccatact |
1962571 |
T |
|
| Q |
575 |
ttcatctcac |
584 |
Q |
| |
|
||||| |||| |
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|
| T |
1962572 |
ttcatgtcac |
1962581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 1962040 - 1962297
Alignment:
| Q |
18 |
agtaacctggcaaatgaatagtagaattaaaaattatatttatccaataattgtattcctaatataaaaatgataatgatcactaaataaaagtcnnnnn |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962040 |
agtaacctggcaaatgaatagtagaattaaaaattatatttatccaataattgtattcctaatataaaaatgataatgatcactaaataaaagtcttttt |
1962139 |
T |
|
| Q |
118 |
nnn---ccataccaataaataaccagaatgtggcaagtaataaaattcagaagtcaaggctgcgctgtttggtcaatggttggggtgaaagtctgacctg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962140 |
ttttttccataccaataaataaccagaatgtggcaagtaataaaattcagaagtcaaggctgcgctgtttggtcaatggttggggtgaaagtctgacctg |
1962239 |
T |
|
| Q |
215 |
tttgtggtttttacccaattctgtgtgctggacacaaagatacacttggtgcctgttt |
272 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962240 |
tttgtggtttttacccaattctgtgtgctggacacaaagatacacttggtgcctgttt |
1962297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 440 - 584
Target Start/End: Complemental strand, 2019375 - 2019231
Alignment:
| Q |
440 |
acttataagctgtaaactaagaacaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttca |
539 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |
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| T |
2019375 |
acttataagctgtaaactaataactaattttcatggagaaaacagttcatattgcagttgttccaggtgttggatatggccacttattcccgattcttca |
2019276 |
T |
|
| Q |
540 |
attctccaaactacttgttcagcttcatccatactttcatctcac |
584 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
2019275 |
attctccaagctacttgttcagcttcatccatactttcatgtcac |
2019231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 294 - 584
Target Start/End: Complemental strand, 2016143 - 2015848
Alignment:
| Q |
294 |
tttgttcttcccaacatgtgtggctcttattcattcgttttgaaacttctcaaacatatacataatgttgattttgcagaacatgtataggtagttgagt |
393 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||| |||||| |||||| ||||| |
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|
| T |
2016143 |
tttgttcttcccatcatgtgtggctcttattcat-cgttttgaaacttgtcaaacacatacataatgtcaattttgcagagcatgtagaggtaggtgagt |
2016045 |
T |
|
| Q |
394 |
tgagttctgtttttggttttcctttcacaagcatnnnnnnntattaac-----------ttataagctgtaaactaagaacaaattttcatggagaaaac |
482 |
Q |
| |
|
| |||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
2016044 |
t-----ctgtttttggttttcctttcacaagcataaaaaaaaaaaaaaaaaaaaaaaagttataagcggtaaactaagaacaaatttttatggagaaaac |
2015950 |
T |
|
| Q |
483 |
agttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatccatactttcatctc |
582 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||| || || | ||||||||||||||||| ||||||||||||||||||| |||||||| || |
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| T |
2015949 |
aattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcagcttcatccaaactttcatgtc |
2015850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 444 - 584
Target Start/End: Complemental strand, 2013522 - 2013381
Alignment:
| Q |
444 |
ataagctgtaaactaag-aacaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaatt |
542 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
2013522 |
ataagctgtaaactaaacaacaaatttccatggagaaaaaaattcatattgcagttgttccaggtgttggatatagtcacttattcccaattcttcaatt |
2013423 |
T |
|
| Q |
543 |
ctccaaactacttgttcagcttcatccatactttcatctcac |
584 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||| |||| |
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|
| T |
2013422 |
ttcgaagctacttgttcagcttcatccatactttcatgtcac |
2013381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 463 - 584
Target Start/End: Complemental strand, 2008955 - 2008834
Alignment:
| Q |
463 |
caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagc |
562 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| ||||||||||||||||| ||||||||||| |
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| T |
2008955 |
caaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagccatttggtccctattcttcaattctccaagagacttgttcagc |
2008856 |
T |
|
| Q |
563 |
ttcatccatactttcatctcac |
584 |
Q |
| |
|
|||||||| |||||||| |||| |
|
|
| T |
2008855 |
ttcatccaaactttcatgtcac |
2008834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 463 - 584
Target Start/End: Original strand, 1968060 - 1968181
Alignment:
| Q |
463 |
caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagc |
562 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || || |||| ||||||||||||||||| ||||||||| | |
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|
| T |
1968060 |
caaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagtcatttggtccctattcttcaattctccaagagacttgttcaac |
1968159 |
T |
|
| Q |
563 |
ttcatccatactttcatctcac |
584 |
Q |
| |
|
|||||||| |||||||| |||| |
|
|
| T |
1968160 |
ttcatccagactttcatgtcac |
1968181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 462 - 584
Target Start/End: Complemental strand, 2005576 - 2005454
Alignment:
| Q |
462 |
acaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcag |
561 |
Q |
| |
|
|||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| || || | ||||||||||||||||| ||||||||| |
|
|
| T |
2005576 |
acaagtttccatggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcaa |
2005477 |
T |
|
| Q |
562 |
cttcatccatactttcatctcac |
584 |
Q |
| |
|
||||||||| |||||||| |||| |
|
|
| T |
2005476 |
cttcatccaaactttcatgtcac |
2005454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 468 - 569
Target Start/End: Complemental strand, 2012565 - 2012464
Alignment:
| Q |
468 |
tttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcat |
567 |
Q |
| |
|
||||||||| |||||| |||| ||||| |||||||| ||||| || ||| | |||||| |||| |||||||| ||||| || ||||| | ||||||||| |
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|
| T |
2012565 |
tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcatttctcaaagttacttatccagcttcat |
2012466 |
T |
|
| Q |
568 |
cc |
569 |
Q |
| |
|
|| |
|
|
| T |
2012465 |
cc |
2012464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 544
Target Start/End: Original strand, 1964500 - 1964581
Alignment:
| Q |
465 |
aattttcatggagaaaacagttcatattgcagttgttcctggtgttgg--atatagccacttattcccaattcttcaattct |
544 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||||| |||||||| ||||| ||| ||| || | ||||||||||||| |
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|
| T |
1964500 |
aatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct |
1964581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 462 - 585
Target Start/End: Original strand, 5901638 - 5901761
Alignment:
| Q |
462 |
acaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcag |
561 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||| |||| |||| | | |||||||| ||| || | |||||| |||||||||| |||||||||||| |
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|
| T |
5901638 |
acaaattttcatggagaaaacaattcacattgctgttattccaggtgcttggtatagccatttagtctctattcttgaattctccaagctacttgttcag |
5901737 |
T |
|
| Q |
562 |
cttcatccatactttcatctcact |
585 |
Q |
| |
|
|| |||||| |||||||| ||||| |
|
|
| T |
5901738 |
ctccatccagactttcatgtcact |
5901761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 579
Target Start/End: Original strand, 18189425 - 18189541
Alignment:
| Q |
463 |
caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagc |
562 |
Q |
| |
|
||||||| |||||| |||||| |||| |||||||||||||| |||||||| ||| | |||||| |||| |||||||||||||| || ||||| | || | |
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| T |
18189425 |
caaatttccatggataaaacaattcacattgcagttgttccaggtgttgggtatggacacttagtccctattcttcaattctcaaagttacttatccatc |
18189524 |
T |
|
| Q |
563 |
ttcatccatactttcat |
579 |
Q |
| |
|
|||||||| || ||||| |
|
|
| T |
18189525 |
ttcatccagacattcat |
18189541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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