View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19030_low_8 (Length: 494)
Name: NF19030_low_8
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19030_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 455
Target Start/End: Original strand, 21253093 - 21253562
Alignment:
| Q |
8 |
atattattctgtatataaaagaaagttaggttaacaaaatttaatgtattcggtccaattttttaaccagatacatcaaaatttatatactttctcttat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21253093 |
atattattctgtatataaaagaaagttaggttaacaaaatttaatgtatttggtccaattttttaaccaaatacatcaaaatttatatactttctcttat |
21253192 |
T |
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| Q |
108 |
gtatagaaccgaagacggtattatttttggtttttagtctctctaaatttttgcttctaagttctaacaacagttctagtctgatagattcatgcaaaat |
207 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21253193 |
gtatagaaccgaagacggtattatttttcgtttttagtctctctaaatttttgcttctaagttttaacaacagttctagtctgatagattcatgcaaaat |
21253292 |
T |
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| Q |
208 |
attcaaaga---attatactaagaaagtaaaaatgaatctatgtcattaatc-------------------aaaaagagtaattgaagtgtatctatata |
285 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21253293 |
attcaaacaattattatactaagaaagtaaaaatgaatctatgtcattaatcaaagacaaggacaaataagaaaaagagtaattgaagtgtatctatata |
21253392 |
T |
|
| Q |
286 |
cctgagcatgtttggctctgacataaggactatcaccataaggaaccttgtaaagtacatgataaatgtcttcttttttcccttttgataataacaaact |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21253393 |
cctgagcatgtttggctctgacataaggactatcaccataaggaaccttgtaaagtacatgataaatgtcttctttttttccttttgataataacaaact |
21253492 |
T |
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| Q |
386 |
cttgttcttgtaactgcctctttcttcttccattttgttagattaagctttttgaggtaagaacttgttg |
455 |
Q |
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| T |
21253493 |
cttgttcttgtaactgcctctttcttcttccattttgttagatgaagctttttgaggtaagaacttgttg |
21253562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 21290132 - 21290182
Alignment:
| Q |
284 |
tacctgagcatgtttggctctgacataaggactatcaccataaggaacctt |
334 |
Q |
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| T |
21290132 |
tacctgagcatgtttggctttgacataaggagtatcaccataaggaacctt |
21290182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 28469500 - 28469564
Alignment:
| Q |
21 |
tataaaagaaagttaggttaacaaaatttaatgtattcggtccaattttttaaccagatacatca |
85 |
Q |
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||||||||| | |||||| ||||||| ||||||||| ||||||| || |||| ||||||||||| |
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| T |
28469500 |
tataaaagacatttaggtcaacaaaagttaatgtatcaggtccaaattattaatcagatacatca |
28469564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 33943043 - 33942978
Alignment:
| Q |
21 |
tataaaagaaagttaggttaacaaaatttaatgtattcggtccaattttttaaccagatacatcaa |
86 |
Q |
| |
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|||||||||||||||||| ||||||| |||||||||| || | | |||||||| ||||||||||| |
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| T |
33943043 |
tataaaagaaagttaggtcaacaaaagttaatgtatttggactgaatttttaactagatacatcaa |
33942978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 41594672 - 41594738
Alignment:
| Q |
20 |
atataaaagaaagttaggttaacaaaatttaatgtattcggtccaattttttaaccagatacatcaa |
86 |
Q |
| |
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|||||| |||||||| ||| ||||||| || |||||| ||||||| |||| ||||||||||||||| |
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| T |
41594672 |
atataagagaaagttgggtcaacaaaagttgatgtatatggtccaaattttgaaccagatacatcaa |
41594738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 35663934 - 35663998
Alignment:
| Q |
22 |
ataaaagaaagttaggttaacaaaatttaatgtattcggtccaattttttaaccagatacatcaa |
86 |
Q |
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|||| |||||||| ||| ||||||| || |||||| ||||||| |||| ||||||||||||||| |
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| T |
35663934 |
ataagagaaagttgggtaaacaaaaattgatgtatctggtccaaattttgaaccagatacatcaa |
35663998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 10069306 - 10069256
Alignment:
| Q |
33 |
ttaggttaacaaaatttaatgtattcggtccaattttttaaccagatacat |
83 |
Q |
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|||||| ||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
10069306 |
ttaggtcaacaaaagttaatgtatctagtccaattttttaaccagatacat |
10069256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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