View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19030_low_9 (Length: 466)

Name: NF19030_low_9
Description: NF19030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19030_low_9
NF19030_low_9
[»] chr2 (8 HSPs)
chr2 (18-450)||(34101918-34102350)
chr2 (110-204)||(33941901-33941995)
chr2 (110-169)||(9477944-9478003)
chr2 (110-192)||(43984999-43985081)
chr2 (127-204)||(34652020-34652097)
chr2 (110-170)||(1810657-1810716)
chr2 (125-197)||(1939323-1939395)
chr2 (167-207)||(3070511-3070551)
[»] chr4 (7 HSPs)
chr4 (111-204)||(2996566-2996659)
chr4 (118-196)||(6987733-6987811)
chr4 (132-200)||(488114-488182)
chr4 (111-195)||(11264294-11264378)
chr4 (167-207)||(17976804-17976844)
chr4 (122-170)||(30668384-30668432)
chr4 (111-179)||(36722678-36722746)
[»] chr5 (1 HSPs)
chr5 (122-207)||(40205055-40205140)
[»] chr1 (5 HSPs)
chr1 (110-204)||(51695478-51695573)
chr1 (110-207)||(15515533-15515630)
chr1 (111-198)||(5756676-5756763)
chr1 (122-198)||(15437967-15438043)
chr1 (132-204)||(35925704-35925776)
[»] chr6 (5 HSPs)
chr6 (110-204)||(20368164-20368258)
chr6 (127-198)||(7148675-7148746)
chr6 (215-257)||(733100-733142)
chr6 (122-199)||(8035137-8035214)
chr6 (160-204)||(8147050-8147094)
[»] chr8 (2 HSPs)
chr8 (111-207)||(11415147-11415243)
chr8 (125-192)||(20672757-20672824)
[»] chr3 (1 HSPs)
chr3 (158-199)||(38319000-38319041)


Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 34101918 - 34102350
Alignment:
Q  18 gtttgttaatggaattgggatagtgagagatcagcataagtgcttatgtataagctattcctatgagataaaataaagtcaaacgnnnnnnngtataagt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  34101918 gtttgttaatggaattgggatagtgagagatcagcataagtgcttatgtataagctattcctatgagataaaataaagtcaaacgtttttttgtataagt 34102017  T
Q  118 tattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataaactgactctgata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  34102018 tattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagagtatgtacatgttataagctgtttttataaactgactctgata 34102117  T
Q  218 agtgcttatggcagtagataagctcaaattaactaatttcaaacaagccataaacactagtaattacttctttaaatagatttaggttttgattttggta 317  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34102118 agtgcttatggcagtaggtaagctcaaattaactaatttcaaacaagccataaacactagtaattacttctttaaatagatttaggttttgattttggta 34102217  T
Q  318 atttttgtagaatatgattctgagattatgttataattggaacagatttagtgttgttgattggttatttatgattatatgatcatttgataggcgttct 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34102218 atttttgtagaatatgattctgagattatgttataattggaacagatttagtgttgttgattggttatttatgattatatgatcatttgataggcgttct 34102317  T
Q  418 actgttctacatattgtgcgaaccagactatac 450  Q
    |||||||||||||||||||||||||||||||||    
T  34102318 actgttctacatattgtgcgaaccagactatac 34102350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 33941901 - 33941995
Alignment:
Q  110 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 204  Q
    ||||||||||| | ||||||| |||||||||| |||| |||||| || ||||||||||||  || ||||| || ||| |||||||||||| ||||    
T  33941901 gtataagttataacttgttttcataagctatcttggagagtttatgataataagttgaaagcagcttatgaacttgtcataagttgttttcataa 33941995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 9477944 - 9478003
Alignment:
Q  110 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaa 169  Q
    ||||||||||| ||||||||| ||||||||||||||| || ||| || ||||||||||||    
T  9477944 gtataagttataagttgttttcataagctatcctggagaggttatgaaaataagttgaaa 9478003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 43985081 - 43984999
Alignment:
Q  110 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataag 192  Q
    |||||| |||| ||||||||| |||||||||| || | || ||| || |||||| ||||||||||| ||| |||| |||||||    
T  43985081 gtataaattataagttgttttcataagctatcttgaagagcttatgaaaataagctgaaaatagataatgaacatattataag 43984999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 34652097 - 34652020
Alignment:
Q  127 tttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 204  Q
    |||| |||||||||| |||| || ||| |  ||||||||||||| || ||||| |||||| ||||||||||| |||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctataa 34652020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 1810657 - 1810716
Alignment:
Q  110 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaa 170  Q
    ||||||||||| |||||||||||||||||||| || | |||||| || |||||| ||||||    
T  1810657 gtataagttat-agttgtttttataagctatcttgaagagtttatgaaaataagctgaaaa 1810716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 1939395 - 1939323
Alignment:
Q  125 tgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtt 197  Q
    |||||| ||||||||| ||||| || ||| |  ||||||||||||| || ||||| |||||| ||||||||||    
T  1939395 tgttttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtt 1939323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 3070551 - 3070511
Alignment:
Q  167 aaaatagattatgtacatgttataagttgtttttataaact 207  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  3070551 aaaatagtttatagacatgttataagttgtttttataaact 3070511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 2996566 - 2996659
Alignment:
Q  111 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 204  Q
    |||||||||| ||||||||| |||||||||| |||| ||  || || ||||||||||||| || ||||| |||||| |||||||||||| ||||    
T  2996566 tataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataa 2996659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 6987811 - 6987733
Alignment:
Q  118 tattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgt 196  Q
    |||||||| ||||| || ||||||||||| || ||| |  |||||||||||||||| ||||| |||||| |||||||||    
T  6987811 tattagttatttttttacgctatcctggagagcttatggaaataagttgaaaatagtttatggacatgtcataagttgt 6987733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 488182 - 488114
Alignment:
Q  132 ataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgttttt 200  Q
    |||||||||| |||| | ||||||  |||||| |||||| || ||||| |||||| |||||||||||||    
T  488182 ataagctatcttggagaatttacgtaaataagatgaaaacagcttatgcacatgtcataagttgttttt 488114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 11264294 - 11264378
Alignment:
Q  111 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttg 195  Q
    |||| ||||| ||||||||| |||||| ||||| || || ||| |  ||||||||||||| || ||||| |||||| ||||||||    
T  11264294 tatatgttataagttgttttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtcataagttg 11264378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 17976804 - 17976844
Alignment:
Q  167 aaaatagattatgtacatgttataagttgtttttataaact 207  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  17976804 aaaatagtttatagacatgttataagttgtttttataaact 17976844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 30668432 - 30668384
Alignment:
Q  122 agttgtttttataagctatcctggatagtttacgagaataagttgaaaa 170  Q
    |||||||||||||||||||| ||||||||||| || | |||| ||||||    
T  30668432 agttgtttttataagctatcttggatagtttatgaaattaagctgaaaa 30668384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 36722746 - 36722678
Alignment:
Q  111 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatg 179  Q
    |||||||||| ||||||||| ||||| ||||||| | || ||| || |||||| | |||||||||||||    
T  36722746 tataagttataagttgttttgataagttatcctgaagagcttatgaaaataagcttaaaatagattatg 36722678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 40205140 - 40205055
Alignment:
Q  122 agttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataaact 207  Q
    ||||||||| ||||||||||||||| || |||    |||||| |||||| |||||||| |||||||||||| ||||| ||||||||    
T  40205140 agttgttttcataagctatcctggagagcttatagaaataagctgaaaacagattatggacatgttataagctgtttatataaact 40205055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 51695573 - 51695478
Alignment:
Q  110 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtac-atgttataagttgtttttataa 204  Q
    ||||||||||| || |||||| |||||||||| |||| | |||| || |||||| ||||||||| ||||| || |||| ||||||||||| |||||    
T  51695573 gtataagttatcagatgttttcataagctatcttggagaatttatgaaaataagctgaaaatagcttatgaacaatgtgataagttgtttatataa 51695478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 15515533 - 15515630
Alignment:
Q  110 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataaact 207  Q
    ||||||| ||| ||||||||| ||||| |||| ||||||| ||| |  ||||| ||||||||||  |||  |||||| |||||||||||| |||||||    
T  15515533 gtataagctataagttgttttcataagttatcatggatagcttatggaaataaattgaaaatagcgtattgacatgtcataagttgttttcataaact 15515630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 5756763 - 5756676
Alignment:
Q  111 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgttt 198  Q
    ||||| |||| |||||||||  ||||||| |||||| || |||| | |||||||||||||||  |||| ||||| ||||||| |||||    
T  5756763 tataaattataagttgttttcgtaagctagcctggagagcttaccaaaataagttgaaaatatcttatatacatattataaggtgttt 5756676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 15437967 - 15438043
Alignment:
Q  122 agttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgttt 198  Q
    ||||||||| ||| |||||||| || ||||||||  |||||| ||||| ||  ||||| |||||| |||||||||||    
T  15437967 agttgttttcataggctatcctcgagagtttacggaaataagctgaaagtaacttatgaacatgtcataagttgttt 15438043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 35925704 - 35925776
Alignment:
Q  132 ataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 204  Q
    |||||||||| |||| |||||| |  ||||||||||||| || ||||| |||||| ||||| |||||| ||||    
T  35925704 ataagctatcatggagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 35925776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 20368258 - 20368164
Alignment:
Q  110 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 204  Q
    |||| |||||| ||||||||| ||||||| || |||| |  ||| || |||||||||||| ||| ||||| |||||| |||||||||||| ||||    
T  20368258 gtatgagttataagttgttttcataagctttcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataa 20368164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 7148675 - 7148746
Alignment:
Q  127 tttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgttt 198  Q
    |||| |||||||| |||||| || ||| || |||||||||||||||| ||||| ||| || |||||||||||    
T  7148675 ttttaataagctaccctggagagcttatgaaaataagttgaaaatagcttatggacaagtcataagttgttt 7148746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 733142 - 733100
Alignment:
Q  215 ataagtgcttatggcagtagataagctcaaattaactaatttc 257  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||    
T  733142 ataagtgcttatggtagtagataagctcaaataaaccaatttc 733100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 8035214 - 8035137
Alignment:
Q  122 agttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttt 199  Q
    ||||||||| ||||| |||||| || || |||||| ||||||||||||| |  |||||  ||||| ||||||||||||    
T  8035214 agttgttttcataagttatcctagaaagcttacgaaaataagttgaaaacaagttatgaccatgtcataagttgtttt 8035137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 8147094 - 8147050
Alignment:
Q  160 taagttgaaaatagattatgtacatgttataagttgtttttataa 204  Q
    |||||||||||||| ||||| | ||||||||||||||||| ||||    
T  8147094 taagttgaaaatagcttatgcatatgttataagttgttttcataa 8147050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 11415147 - 11415243
Alignment:
Q  111 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataaact 207  Q
    ||||||||||  | |||||| |||||||||||| || |||||  || |||||| ||| ||||| ||||| |||||||||||| |||||  |||||||    
T  11415147 tataagttatacgctgttttcataagctatcctagagagtttgtgaaaataagctgagaatagcttatggacatgttataagctgtttccataaact 11415243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 20672757 - 20672824
Alignment:
Q  125 tgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataag 192  Q
    |||||||||||||||||||||| || ||| || |||||| |||||| || ||||| |||||| |||||    
T  20672757 tgtttttataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataag 20672824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 38319000 - 38319041
Alignment:
Q  158 aataagttgaaaatagattatgtacatgttataagttgtttt 199  Q
    |||||| ||||||||| ||||| |||||||||||||||||||    
T  38319000 aataagctgaaaatagcttatgaacatgttataagttgtttt 38319041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University