View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19031_high_4 (Length: 283)
Name: NF19031_high_4
Description: NF19031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19031_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 38169629 - 38169363
Alignment:
| Q |
1 |
tgggtaagggagaaaaaggagaggaactaaggaggaatgctatgaaatggaaagatttggctagggcagctgtgaaagaaggagggtcttcaaataggaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38169629 |
tggggaagggagaaaaaggagaggaactaaggaggaatgctaagaaatggaaagatttggctagggcagctgtgaaagaaggagggtcttcaaataggaa |
38169530 |
T |
|
| Q |
101 |
tttgaggagttatctaaatgatattgcatgtataactcaaatttagttaactcttttttcctctgttttttgagaaagtgtttagtattactttatctta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
38169529 |
tttgaggagttatctaaatgatattgcatgtataactcaaatttagttaactcttttttcctctgttttttgagaaagtgtttagtagtactttatctca |
38169430 |
T |
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| Q |
201 |
gaaaaggaacatcacaatctcttcaataataaagagtagtcaattacaatccactttgtcactatac |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
38169429 |
gaaaaggaacatcacaatctcttcaataataaagagtagtcaatcacaatccactttgtcacaatac |
38169363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 38179443 - 38179338
Alignment:
| Q |
1 |
tgggtaagggagaaaaaggagaggaactaaggaggaatgctatgaaatggaaagatttggctagggcagctgtgaaagaaggagggtcttcaaataggaa |
100 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
38179443 |
tggggaagggagaaaagggagaggaactaaggaggaatgctatgaaatggaaagatttagctagggcagctgtgaaagaaggggggtcttcaaataagaa |
38179344 |
T |
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| Q |
101 |
tttgag |
106 |
Q |
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|||||| |
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| T |
38179343 |
tttgag |
38179338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 38184109 - 38184004
Alignment:
| Q |
1 |
tgggtaagggagaaaaaggagaggaactaaggaggaatgctatgaaatggaaagatttggctagggcagctgtgaaagaaggagggtcttcaaataggaa |
100 |
Q |
| |
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|||| ||||||||||||||||||||||| || |||||||||| ||||||||| ||||||||| | |||| |||| |||||||||||||| |||| ||| |
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| T |
38184109 |
tggggaagggagaaaaaggagaggaacttagaaggaatgctaagaaatggaagagtttggctagtgaagctatgaaggaaggagggtcttcgaataagaa |
38184010 |
T |
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| Q |
101 |
tttgag |
106 |
Q |
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| |||| |
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| T |
38184009 |
tctgag |
38184004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 30508959 - 30509015
Alignment:
| Q |
199 |
tagaaaaggaacatcacaatctcttcaataataaagagtagtcaattacaatccact |
255 |
Q |
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|||||| ||| ||||| |||||||||| ||||||||| ||||||||||||| |||| |
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| T |
30508959 |
tagaaagggagcatcatgatctcttcaagaataaagagcagtcaattacaatacact |
30509015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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