View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19031_low_2 (Length: 582)
Name: NF19031_low_2
Description: NF19031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19031_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 13 - 518
Target Start/End: Original strand, 26421906 - 26422411
Alignment:
| Q |
13 |
aaaataggcaaggatgaattttgaacataatattgtaattcagatttttgtttattgttgaattttggggaaatcctgtactggtattttcggaaccata |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26421906 |
aaaataggcaaggatgaattttgaacataatattgtaatttagatttttgtttattgttgaattttggggaaatcctgtactggtattttcgggaccata |
26422005 |
T |
|
| Q |
113 |
taaatgtgttcattgtgtaaactgctgacccttggtttggtaggaataataagtgaactctatgtacctcttaaatagaacgagggaccaaaatatagaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26422006 |
taaatgtgttcattgtgtaaactgctgacccttggtttggtaggaataataagtgaactctatgtacctcttaaatagaacgagggaccaaaataaagaa |
26422105 |
T |
|
| Q |
213 |
cttatcaaagatactactcaagaaatcagtcacaaaaaattcactgatgaatattgaaaagccaagcttcgctcgaaaatagatcttatttaagaggcta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422106 |
cttatcaaagatactactcaagaaatcagtcacaaaaaattcactgatgaatattgaaaagccaagcttcgctcgaaaatagatcttatttaagaggcta |
26422205 |
T |
|
| Q |
313 |
gttagcttgttcaagagaggaaaacttgcaaacaagcgttcaaccctccgcaagcataaacacacagacaaaacatgagtcgaagacgaaaacaattccc |
412 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
26422206 |
gttagcttgttcaagagaggaaaacatgcaaacaagcgttcaaccctccacaagcataaacacacagacaaatcatgcgtcgaagacgaaaacaattccc |
26422305 |
T |
|
| Q |
413 |
ttcatcaaattgaagtgttgaagaaaaactcttagacacatgcaataagtagtcgatgacattgtaataaagagatttaatgtatattttagaaaacaca |
512 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26422306 |
ttcatcaaattgaagtgttgaagaaaaactcttagactcatgcaataagtagtcgatgacattgtaataaagagatttaatgtatattttagaaatcaca |
26422405 |
T |
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| Q |
513 |
tctgcc |
518 |
Q |
| |
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|||||| |
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|
| T |
26422406 |
tctgcc |
26422411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 533 - 563
Target Start/End: Original strand, 26422424 - 26422454
Alignment:
| Q |
533 |
accaaaataaagttaactattatcattaatc |
563 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
26422424 |
accaaaataaagttaactattatcattaatc |
26422454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 535 - 563
Target Start/End: Original strand, 24989758 - 24989786
Alignment:
| Q |
535 |
caaaataaagttaactattatcattaatc |
563 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
24989758 |
caaaataaagttaactattatcattaatc |
24989786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 9710319 - 9710290
Alignment:
| Q |
534 |
ccaaaataaagttaactattatcattaatc |
563 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
9710319 |
ccaaaataaagttaactattatcattaatc |
9710290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 535 - 563
Target Start/End: Complemental strand, 36734053 - 36734025
Alignment:
| Q |
535 |
caaaataaagttaactattatcattaatc |
563 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
36734053 |
caaaataaagttaactattatcattaatc |
36734025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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