View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19031_low_3 (Length: 457)
Name: NF19031_low_3
Description: NF19031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19031_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 2237197 - 2237614
Alignment:
| Q |
16 |
atccacttttctgaacagcaacaacaatgtctttctcagtaccatttacatgtgtagttaacatcattggtgcctctccaaaatctgcatctggtatagg |
115 |
Q |
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| T |
2237197 |
atccacttttctgaacagcaacaacaatatctttctttgttccatttacatgtgtagttaacatcattggtgcctctccaaaatctgcatctggtataga |
2237296 |
T |
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| Q |
116 |
accttgaggcggacaattaggaagtgaagcatttttacatgcaacaaaccatacatctagacctcctaattgttggtaccatttaaaatcaccactgtcc |
215 |
Q |
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| T |
2237297 |
accttgaggtggacaattagaaattgaagcattgttacatgaaacaaaccatacatcatatcctcctaattgtttgtaccatttgatattaccactgtcc |
2237396 |
T |
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| Q |
216 |
aaatcaagggccaagattgaatttgagtgattttctggttcaacacacttgtcttgttctataggagcagtttcattattttgtctttcttgacattcaa |
315 |
Q |
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| T |
2237397 |
aaatcaagggccaagattgaatttgagtgattttctggttcaacacacttgtcttgttcaataggagtagtttgattattttgtctttcttgacattcaa |
2237496 |
T |
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| Q |
316 |
gtatgttttctggtgcagagtagagatttccagtggcaatatagacatgttttctataaacatcaatggaaggactacttccccaaatggcagctccagc |
415 |
Q |
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| T |
2237497 |
gtacgttttttggggcagagtagagatttccggtggcaatatagacatgttttcgataaacatcaatggaaggactacttccccaaatggcagctccagc |
2237596 |
T |
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| Q |
416 |
atattcacctatctttcc |
433 |
Q |
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| T |
2237597 |
atatgctcctatctttcc |
2237614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 2261297 - 2261068
Alignment:
| Q |
30 |
acagcaacaacaatgtctttctcagtaccatttacatgtgtagttaacatcattggtgcctctccaaaatctgcatctggtataggaccttgaggcggac |
129 |
Q |
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|||||||||||||| |||| | ||||||||| |||| | || | |||||||||||||||||||||||| ||||| || |||| || ||| |||| |
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| T |
2261297 |
acagcaacaacaatatcttgtttagtaccattaacatcaattgtgagcatcattggtgcctctccaaaatcagcatcagggttaggtcc---aggaggac |
2261201 |
T |
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| Q |
130 |
aattaggaagtgaagcatttttacatgcaacaaaccatacatctagacctcctaattgttggtaccatttaaaatcaccactgtccaaatcaagggccaa |
229 |
Q |
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| T |
2261200 |
aattaggtgttgacaaatcattacaagcaaggaaccaaacatcatatccacctaattgatggtaccatttaatttcaccattgtacaaatcaagtgctaa |
2261101 |
T |
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| Q |
230 |
gattgaatttgagtgattttctggttcaacaca |
262 |
Q |
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| T |
2261100 |
gattgaattagaatgattttctggttcaacaca |
2261068 |
T |
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