View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19031_low_4 (Length: 331)
Name: NF19031_low_4
Description: NF19031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19031_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 37719948 - 37720262
Alignment:
| Q |
1 |
aaaagaatgttaccaatagaaaaagggttctctgctcttagacttgagccatttatcataataaaagtgtagattatgtccatatcgatgctgtggatca |
100 |
Q |
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| T |
37719948 |
aaaagaatgttaccaatagaaaaagggttctctgctcttagacttgagccatttatcataataaaagtgtagattatgtccatatcgatgttgtggatca |
37720047 |
T |
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| Q |
101 |
atctgtttcacaagcatttaaagcaactcagtaaataatgattgatgtgaataacaaacttacaaacatataaatttacagctatataaagaaatagtat |
200 |
Q |
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| T |
37720048 |
atctgtttcacaagcatttaaagcaactcggtaaataatgattgatgtgaataacaaacttacaaacatataaatttacagctatataaaaaaatagtat |
37720147 |
T |
|
| Q |
201 |
gatcaagatcaagatcaagtgtttgacttactgcttcaagccaatgcagcaaagcaagttttctagctttaacatcttttgataaacctttaccaacctt |
300 |
Q |
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| T |
37720148 |
gatcaagatcaagatcaagtgtttgacttactgcttcaagccaatgcagcaaagcaagttttctagctttaacatcttttgataaacctttaccaacctt |
37720247 |
T |
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| Q |
301 |
agcagctcttgttct |
315 |
Q |
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| T |
37720248 |
agcagctcttgttct |
37720262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 35622861 - 35622955
Alignment:
| Q |
10 |
ttaccaatagaaaaagggttctctgctcttagacttgagccatttatcataataaaagtgtagattatgtccatatcgatgctgtggatcaatct |
104 |
Q |
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| T |
35622861 |
ttaccagtagaagaagggttctctgctttgacattgaagccatttatcataataaaagtgtagattatgtccgtagcgatgtcgtgggtcaatct |
35622955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 315
Target Start/End: Original strand, 35623058 - 35623149
Alignment:
| Q |
224 |
tgacttactgcttcaagccaatgcagcaaagcaagttttctagctttaacatcttttgataaacctttaccaaccttagcagctcttgttct |
315 |
Q |
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||||| || ||||| ||||||||| ||| |||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||| ||||| |
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| T |
35623058 |
tgactaaccgcttcgagccaatgctgcagagcaagtttttgtgctttctcatctttggataaaccttttccaaccttagcagctctagttct |
35623149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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