View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19032_high_21 (Length: 263)
Name: NF19032_high_21
Description: NF19032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19032_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 12762646 - 12762405
Alignment:
| Q |
7 |
gacactttcattaccacttccatatataatcctcaatatttcttgtggagtccttgaatatgacagggaagattcatcacctgcaaggatggtgctgcca |
106 |
Q |
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| T |
12762646 |
gacactttcattaccacttccatatataatcctcaatatttcttgtggagtccttgaatatgacagggaagattcatcacctgcaaggatggtgctgcca |
12762547 |
T |
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| Q |
107 |
atgcttcccgaggcttcatcaactccaacgtctttcacacccccgtgtcctaatatatctctaagcgttgaaatgcgttcagtgaattctcccacactca |
206 |
Q |
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| T |
12762546 |
atgcttcctgaggcttcatcaactccaacgtctttcacacccccgtgtcctaatatatctctaagcgttgaaatgcgttcagtgaattctcccacactaa |
12762447 |
T |
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| Q |
207 |
ctccataaggtttcaccttcaattcgcgacgctcgaataaca |
248 |
Q |
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| T |
12762446 |
ctccataaggtttcaccttcaattcgcgacgctcgaataaca |
12762405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 12783930 - 12783868
Alignment:
| Q |
7 |
gacactttcattaccacttccatatataatcctcaatatttcttgtggagtccttgaatatga |
69 |
Q |
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| T |
12783930 |
gacactctcattaccacttccatatataatcctcaatatttcttgtggagtccttggatatga |
12783868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 12772050 - 12771967
Alignment:
| Q |
13 |
ttcattaccacttccatatataatcctcaatatttcttgtggagtccttgaatatgacagggaagattcatcacctgcaaggat |
96 |
Q |
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| T |
12772050 |
ttcatcaccacttccatatacaattctcaatatttcatttggagttcttgaatatgatagtgaatttttatcaccagcaaggat |
12771967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 50712407 - 50712441
Alignment:
| Q |
35 |
atcctcaatatttcttgtggagtccttgaatatga |
69 |
Q |
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| T |
50712407 |
atcctcaatatttcttctggagtccttgaatatga |
50712441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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