View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19032_high_23 (Length: 256)
Name: NF19032_high_23
Description: NF19032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19032_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 8064406 - 8064316
Alignment:
| Q |
13 |
aatattttgttgaccaagattcaccaattttacactacaatccaacctcacaaaatttgtttgtcaacaagtaatactcgtactcataatg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8064406 |
aatattttgttgaccaagattcaccaattttacactacaatccaacctcacaaaatttgtttgtcaacaagtaatactcgtactcataatg |
8064316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 8064231 - 8064180
Alignment:
| Q |
188 |
ctatctataagaaggttggcgttgtttggtattattattacccaccacgggt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8064231 |
ctatctataagaaggttggcgttgtttggtattattattacccaccacgggt |
8064180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University