View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19032_high_3 (Length: 702)

Name: NF19032_high_3
Description: NF19032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19032_high_3
NF19032_high_3
[»] chr3 (1 HSPs)
chr3 (20-685)||(26855905-26856570)


Alignment Details
Target: chr3 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 20 - 685
Target Start/End: Original strand, 26855905 - 26856570
Alignment:
Q  20 attagtatttgtgttggcactatgtttaagaaaatccatggacaaagaattggccacaatttcatcaatgggaatattagcagggtccataggaacaaca 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||    
T  26855905 attagtatttgtattggcactatgtttaagaaaatccatggacaaagaattagccacaatttcatcaatgggagtattagcagggtacataggaacaaca 26856004  T
Q  120 gcatttcctgttctattttgtattctcaaagagcttaaccttataaactcagatgtcggacgacttgcattatcgaccgcattaatcggcgatgcatgtg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  26856005 gcatttcctgttctattttgtattctcaaagagcttaaccttataaactcagatgtcggacgacttgcattatcgaccgcgttaatcggcgatgcatttg 26856104  T
Q  220 gaattggcggtgttttagcatttgaagcaggaaaacaaggagaaataaaatcagataattctctgtggttcatgatttctgttgtagttgtggcaatact 319  Q
    ||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  26856105 gaattggtggtgttttagcatttgaagcgggaagacaaggagaaataaaatcagagaattctttgtggttcatgatttctgttgtagttgtggcaatact 26856204  T
Q  320 tttattttgctgtattaggccaacaatgatgtggattaatagaaaaacaccagaaggagaagaagtggatcaatcttttgttgttgctattattttaggg 419  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26856205 tttactttgttgtattaggccaacaatgatgtggattaatagaaaaacaccagaaggacaagaagtggatcaatcttttgttgttgctattattttaggg 26856304  T
Q  420 gtttttgtgatggcatttataactgacatgtttggtatagcaattgttaatggatctttctggttagggttggttactcctgatggacctcgtttaggag 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| || ||||||||||||||||||     
T  26856305 gtttttgtgatggcatttataactgacatgtttggtatagcaattgttaatgggtctttctggttgggtttggttacaccggatggacctcgtttaggaa 26856404  T
Q  520 caacaatggtacaaaagaccaagactattatgaatgagtttcttatgccattttcattcattatggtgggacaatattttgatttgtttgcattgggggc 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26856405 caacaatggtacaaaagaccaagactattatgaatgagtttcttatgccattttcattcattatggtgggacaatattttgatttttttgcattgggggc 26856504  T
Q  620 ttctgattggaaaactttgcaacctttgtttctcttgattttgactggatactcaaccaaattctt 685  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26856505 ttctgattggaaaagtttgcaacctttgtttctcttgattttgactggatactcatccaaattctt 26856570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University