View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19032_high_8 (Length: 555)
Name: NF19032_high_8
Description: NF19032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19032_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 17 - 537
Target Start/End: Original strand, 27926765 - 27927285
Alignment:
| Q |
17 |
tgtgagcttgatgaagattcaaataagaggaattgagagttaattagaatgaaacccctagcattgtatttatttggaatcatcattaaaaagaatcgat |
116 |
Q |
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| T |
27926765 |
tgtgagcttgatgaagattcaaataagaggaattgagagttaattagaatgaaacccctagcattgtatttatttggaatcatcattaaaaagaatcgat |
27926864 |
T |
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| Q |
117 |
tggaatttgatggatatttttaaattttaaagtatggattttttaaaaccctaagcaagagatgtcaatgtaacattagatttggatccatgaaaacaaa |
216 |
Q |
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| T |
27926865 |
tggaatttgatggatatttttaaattttaaagtatggattttttaaaaccctaagcaagagatgtcaatgtaacattagatttggatccatgaaaacaaa |
27926964 |
T |
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| Q |
217 |
agtgagcttggtggagatgtaagaggaattgtgtttgaaatcattaaaataattggttggacaagatttgtgttgatttctttatttaattaactaaaat |
316 |
Q |
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| T |
27926965 |
agtgagcttggcggagatgtaagaggaattgtgtttggaatcattaaaataattgattggacaagatttgtgttgatttctttatataattaactaaaat |
27927064 |
T |
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| Q |
317 |
cagaaggatttcaaagccaaatcaatttgtcatttttaactttcctaattgaagatttcagtttgaaaagaaatgaattagtgactagtggttgatatct |
416 |
Q |
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| T |
27927065 |
cagaaggatttcaaagccaaatcaatttgtcatttttaactttcctaattgaagatttcagtttgaaaagaaatgaattagtgactagtggttgatatct |
27927164 |
T |
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| Q |
417 |
ttcaacttatagaaatctatctcttaacaaaatcaaatgtgatttcatgtgtcgatacaaaaataaatgcacattcaattctcagtttgagtgtcctctt |
516 |
Q |
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| T |
27927165 |
ttcaacatatagaaatctatctcttaacaaaatcaaatgtgatttcatgtgtggatacaaaaataaatgcacattcaattctcagtttgagtgtccactt |
27927264 |
T |
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| Q |
517 |
gatttttattgtcgaggatat |
537 |
Q |
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| T |
27927265 |
gatatttattgtcgaggatat |
27927285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 277 - 361
Target Start/End: Original strand, 27932578 - 27932662
Alignment:
| Q |
277 |
acaagatttgtgttgatttctttatttaattaactaaaatcagaaggatttcaaagccaaatcaatttgtcatttttaactttcc |
361 |
Q |
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| T |
27932578 |
acaagatttgtgttgattactttatttaattaactaaaatcagaagagtttcaaagtcaaatcaatttgttgcttttaactttcc |
27932662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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