View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19032_low_10 (Length: 525)
Name: NF19032_low_10
Description: NF19032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19032_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 506
Target Start/End: Complemental strand, 2701447 - 2700947
Alignment:
| Q |
14 |
ttctaccttttttgtttaaaatgctagt-aaaaagaatcgatttcctaaaatttactggtagcttactatannnnnnnnnngaggtaatagcttgctgat |
112 |
Q |
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| T |
2701447 |
ttctaccttttttgtt-aaaatgctagttaaaaagaatcgatttcttaaaacttactgatagcttactatattttttttt-gaggtaatagcttgctgat |
2701350 |
T |
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| Q |
113 |
aggttgctatatttaattagtacgaaccaattagtaccaaaactatataacatattgattttttctcaactcgtgtg-----aatccatatccatagtaa |
207 |
Q |
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| T |
2701349 |
agcttactatatttaattagtacgaaccaactagtaccaaaactatataacatattaattttatctcaaatcgtgtaccgcaaatccatatccatagtaa |
2701250 |
T |
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| Q |
208 |
cgcgtattgtgaattatgtgactatgtttcgatcactatccatactta----tatctatccaacataaactaacttatctcatcaaaagagtcaatctat |
303 |
Q |
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| T |
2701249 |
cgtgtattgcgaattatgtgactatgtttcgatcaccatccatacttacttatacctatccaacataaactaacttatctcatcaaaagagccaatctat |
2701150 |
T |
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| Q |
304 |
aaaaagaaaaacgaagtgcactaaagattattattattatttctgaataagagataagcattgtccatagtcttggtaaactaagaagtagcaaacaaca |
403 |
Q |
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| T |
2701149 |
aaaaagaaaaacgaagtgcactaaagattattattattatttctgaataagagataaacattgtccatagtcttggtaaactaagaagtagcaaacaaca |
2701050 |
T |
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| Q |
404 |
aaactctgcctctatctttcttgaaactatcaatggaaggagaaggtgataagtggcagcagtgtaatgaagatgttgctctgaatattcccttaatagc |
503 |
Q |
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| T |
2701049 |
aaactctacctctatctttcttgaaactatcaatggaaggtgaaggtgataagtggcagcagtgtagtgaagatgttgctctgaatattcccttaatagc |
2700950 |
T |
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| Q |
504 |
aga |
506 |
Q |
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| T |
2700949 |
aga |
2700947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 2701706 - 2701643
Alignment:
| Q |
21 |
ttttttgtttaaaatgctagtaaaaagaatcgatttcct-aaaatttactggtagcttactata |
83 |
Q |
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| T |
2701706 |
ttttttatttaaaatgctagtaaaaataatcgatttcttaaaaatttaatgatagcttactata |
2701643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 2701583 - 2701549
Alignment:
| Q |
9 |
gattattctaccttttttgtttaaaatgctagtaa |
43 |
Q |
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| T |
2701583 |
gattcttctaccttttttgtttaaaatgctagtaa |
2701549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 418 - 494
Target Start/End: Complemental strand, 10843596 - 10843520
Alignment:
| Q |
418 |
tctttcttgaaactatcaatggaaggagaaggtgataagtggcagcagtgtaatgaagatgttgctctgaatattcc |
494 |
Q |
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| T |
10843596 |
tcttccttgaaaatatcaatggaaggagaaggtgataagtggcagaggtgtgatgaagatatctctctgaatgttcc |
10843520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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