View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19032_low_12 (Length: 368)
Name: NF19032_low_12
Description: NF19032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19032_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 3917936 - 3917578
Alignment:
| Q |
1 |
tttaaaagaccatctacaccagtgcccaagtaggctttctgaggagatggtgaagtgtatggcaactatgtattgctggcttcgtagtgcaaaatctgtc |
100 |
Q |
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| T |
3917936 |
tttaaaagaccatctacaccagtgcccaagtaggctttctgaggagatgatgaagtgtatggcaactatgtattgctggcttcgtagtgcaaaatctgtc |
3917837 |
T |
|
| Q |
101 |
aacgctgaaaacagtaggtcaccgatattgtcaaggtcctccaccaatgacatacagcctcgacacagtattgtagaggatcaagactgttcttgtaaat |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3917836 |
aacgctgaaaacagtaggtcaccaatattgtcaaggtcctccaccaatgccatacagcctcgacacagtattgtagaggatcaagactgttcttgtaaat |
3917737 |
T |
|
| Q |
201 |
ctgcagtggaaatatcttggatagctacaagaaaacgtcattcttctcatgcttcttacgccatggacaactacaggttggttctttggatataatttca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3917736 |
ctgcagtggaaatatcttggatagctacaagaaaacgtcattcttctcatgcttcttacgccatggacaactacaggttggttctttggatataatttca |
3917637 |
T |
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| Q |
301 |
aaacggtgttaaacatatgactgagtgtcaaaattcaaataattttctagatatatttt |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3917636 |
aaacggtgttaaacatatgactgagtgtcaaaattcaaataattttctagatatatttt |
3917578 |
T |
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