View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19032_low_13 (Length: 354)
Name: NF19032_low_13
Description: NF19032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19032_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 54479578 - 54479900
Alignment:
| Q |
13 |
cagaccctttgatactggaccctttgattatgatgcttgatcactgactcatttcatgcatatcatctattatattttatattagtcttaaggtttgttg |
112 |
Q |
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| T |
54479578 |
cagaccctttgatactggaccctttgattatgatgcttgatcactgactcatttcatgcatatcatctattatattttatattagtcttaaggtttgttg |
54479677 |
T |
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| Q |
113 |
ccatttattttcttatttcgttcatacttcgtcttatacatgcaaatgtataatctcctctatattcaccaaaaacaatacgtacttgtttaatctcctc |
212 |
Q |
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| T |
54479678 |
ccatttattttcttatttcgttcatactttgtcttatacatgcaaatgtataatctcctctatattcaccaaaaacaatacgtacttgtttaatctcctc |
54479777 |
T |
|
| Q |
213 |
tatacaagcaatgattctaatgaaagcatgtttttgttaccgcattgatcggtgaatcccattcattgactagtttgtacaaattgtgtttacttttatt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54479778 |
tatacaagcaatgattctaatgaaagcatgtttttgttaccgcattgatcagtgaatcccattcattgactagtttgtacaaattgtgtttacttttatt |
54479877 |
T |
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| Q |
313 |
tattatcttttgtatgaatcgtt |
335 |
Q |
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||||||||||||||||||||||| |
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| T |
54479878 |
tattatcttttgtatgaatcgtt |
54479900 |
T |
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