View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19032_low_14 (Length: 335)

Name: NF19032_low_14
Description: NF19032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19032_low_14
NF19032_low_14
[»] chr4 (5 HSPs)
chr4 (1-325)||(54641461-54641789)
chr4 (1-156)||(54641801-54641955)
chr4 (1-156)||(54938283-54938440)
chr4 (161-325)||(54641280-54641449)
chr4 (155-325)||(54938097-54938271)
[»] chr7 (2 HSPs)
chr7 (1-156)||(13078070-13078226)
chr7 (155-325)||(13078238-13078413)
[»] chr3 (2 HSPs)
chr3 (1-156)||(39984258-39984414)
chr3 (155-325)||(39984071-39984246)
[»] chr2 (6 HSPs)
chr2 (1-156)||(14685096-14685252)
chr2 (1-156)||(21306952-21307108)
chr2 (1-156)||(40421920-40422076)
chr2 (155-325)||(14685264-14685439)
chr2 (155-325)||(40422088-40422263)
chr2 (168-325)||(21307120-21307282)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 54641461 - 54641789
Alignment:
Q  1 atttctttattgcaaagaagtttgcacaaatccgttt-gctctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctcta 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  54641461 atttctttattgcaaagaagtttgcacaaatccgttttgctctcttgttccatttccacaatcatgacatgcatatgggcattttctacat--ctctcta 54641558  T
Q  100 ttttccccatttctacatcttcccagcctttctcttctcctatcgcggtgggatttgaagtataacaaaagtgtccaccagggtcccata-----aagta 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||    
T  54641559 ttttccccatttctacatcttcccagcctttctcttctcctatcgcggtgggatttgaagtataacaaaagtgtccaccagggtcccataacttgaagta 54641658  T
Q  195 taatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctgtttgtagtgatatttttgatnnnnnnntacaggatgattgatgtc 294  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  54641659 taatgatagagcgatatgtgaatcatgcaaacttatgccttgatcatatactctgtttgtagtgatatttttgataaaaaaatacaggatgattgatgtc 54641758  T
Q  295 gtggtgcccatggtagttccccttatctctg 325  Q
    ||||||||||| |||||||||||||||||||    
T  54641759 gtggtgcccatagtagttccccttatctctg 54641789  T

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Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 54641801 - 54641955
Alignment:
Q  1 atttctttattgcaaagaagtttgcacaaatccgttt-gctctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctcta 99  Q
    |||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||  |||||||    
T  54641801 atttctctattgcaaagaagtttgcacaaatccgttttgctctcctgttccatttccacaatcatgacatgcatacgggcattttctacat--ctctcta 54641898  T
Q  100 ttttccccatttctacatcttcccagcctttctcttctcctatcgcggtgggatttg 156  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  54641899 ttttccccatttgtacatcttcccagcctttctcttctcctatcgcggtgggatttg 54641955  T

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Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 54938283 - 54938440
Alignment:
Q  1 atttctttattgcaaagaagtttgcacaaatccgttt-gctctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctcta 99  Q
    |||||||||||||||  |||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  54938283 atttctttattgcaattaagtttgcacaaatccgttttgctctcctgttccatttccataatcatgacatgcatatgggcattttctacatatctctcta 54938382  T
Q  100 ttttccccatttctacat-cttcccagcctttctcttctcctatcgcggtgggatttg 156  Q
    |||||||||||||| ||| ||||| | |||||||||||||||||||||||||||||||    
T  54938383 ttttccccatttcttcatccttccaaacctttctcttctcctatcgcggtgggatttg 54938440  T

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Target: chr4; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 161 - 325
Target Start/End: Original strand, 54641280 - 54641449
Alignment:
Q  161 ataacaaaagtgtccaccagggtcccataa-----agtataatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctgtttgta 255  Q
    |||||| |||||||||||||||||||||||     |||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54641280 ataacagaagtgtccaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaacttatgccttgatcatatactctgtttgta 54641379  T
Q  256 gtgatatttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatggtagttccccttatctctg 325  Q
    ||||||||||||||       ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54641380 gtgatatttttgataaaaaaatacaggatgattgatgtcgtggtgcccatagtagttccccttatctctg 54641449  T

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Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 155 - 325
Target Start/End: Original strand, 54938097 - 54938271
Alignment:
Q  155 tgaagtataacaaaagtgtccaccagggtcccataa----agtataatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctgt 250  Q
    ||||| ||| || ||||||||||| |||||||||||    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  54938097 tgaaggatatcataagtgtccacctgggtcccataactgaagtataatgacagagcgatgtgtgaatcatgcaaacttatgccctgatcatatactctgt 54938196  T
Q  251 ttgtagtgatatttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatggtagttccccttatctctg 325  Q
    ||||||||||||||||||        ||| ||||||||||||| ||||||||||| ||||| |||||||||||||    
T  54938197 ttgtagtgatatttttgagaaaaaaatactggatgattgatgttgtggtgcccatagtagtcccccttatctctg 54938271  T

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Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 13078226 - 13078070
Alignment:
Q  1 atttctttattgcaaagaagtttgcacaaatccgttt-gctctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctcta 99  Q
    |||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  13078226 atttctttattgcaaagaagtttgcacaaatctgttttgctctcctgtcccatttccacaatcatgacatgcatatggacattttctacatctctctcta 13078127  T
Q  100 ttttccccatttctacatcttcccagcctttctcttctcctatcgcggtgggatttg 156  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13078126 ttttccccatttctacatcttcccaacctttctcttctcctatcgcggtgggatttg 13078070  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 155 - 325
Target Start/End: Complemental strand, 13078413 - 13078238
Alignment:
Q  155 tgaagtataacaaaagtgtccaccagggtcccataa-----agtataatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctg 249  Q
    ||||| ||| || ||||||||||| |||||||||||     |||||||||| |||||  ||||||||||||||||||||||||||||||||||||| |||    
T  13078413 tgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaacttatgccttgatcatataccctg 13078314  T
Q  250 tttgtagtgatatttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatggtagttccccttatctctg 325  Q
    ||||| ||||||||||| |        ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  13078313 tttgtggtgatattttttagcaaaaaatacaggatgattgatgtcgtggtgcccacagtagttccccttatctctg 13078238  T

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Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 39984258 - 39984414
Alignment:
Q  1 atttctttattgcaaagaagtttgcacaaatccgttt-gctctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctcta 99  Q
    |||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  39984258 atttctttattgcaaagaagtttgcacaaatctgttttgctctcctgtcccatttccacaatcatgacatgcatatggacattttctacatctctctcta 39984357  T
Q  100 ttttccccatttctacatcttcccagcctttctcttctcctatcgcggtgggatttg 156  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39984358 ttttccccatttctacatcttcccaacctttctcttctcctatcgcggtgggatttg 39984414  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 155 - 325
Target Start/End: Original strand, 39984071 - 39984246
Alignment:
Q  155 tgaagtataacaaaagtgtccaccagggtcccataa-----agtataatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctg 249  Q
    ||||| ||| || ||||||||||| |||||||||||     |||||||||| |||||  ||||||||||||||||||||||||||||||||||||| |||    
T  39984071 tgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaacttatgccttgatcatataccctg 39984170  T
Q  250 tttgtagtgatatttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatggtagttccccttatctctg 325  Q
    ||||| ||||||||||| |        ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  39984171 tttgtggtgatattttttagcaaaaaatacaggatgattgatgtcgtggtgcccacagtagttccccttatctctg 39984246  T

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Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 14685252 - 14685096
Alignment:
Q  1 atttctttattgcaaagaagtttgcacaaatccgttt-gctctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctcta 99  Q
    |||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  14685252 atttctttattgcaaagaagtttgcacaaatctgttttgctctcctgtcccatttccacaatcatgacatgcatatggacattttctacatctctctcta 14685153  T
Q  100 ttttccccatttctacatcttcccagcctttctcttctcctatcgcggtgggatttg 156  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14685152 ttttccccatttctacatcttcccaacctttctcttctcctatcgcggtgggatttg 14685096  T

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Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 21307108 - 21306952
Alignment:
Q  1 atttctttattgcaaagaagtttgcacaaatccgttt-gctctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctcta 99  Q
    |||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  21307108 atttctttattgcaaagaagtttgcacaaatctgttttgctctcctgtcccatttccacaatcatgacatgcatatggacattttctacatctctctcta 21307009  T
Q  100 ttttccccatttctacatcttcccagcctttctcttctcctatcgcggtgggatttg 156  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21307008 ttttccccatttctacatcttcccaacctttctcttctcctatcgcggtgggatttg 21306952  T

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Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 40422076 - 40421920
Alignment:
Q  1 atttctttattgcaaagaagtttgcacaaatccgttt-gctctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctcta 99  Q
    |||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  40422076 atttctttattgcaaagaagtttgcacaaatctgttttgctctcctgtcccatttccacaatcatgacatgcatatggacattttctacatctctctcta 40421977  T
Q  100 ttttccccatttctacatcttcccagcctttctcttctcctatcgcggtgggatttg 156  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40421976 ttttccccatttctacatcttcccaacctttctcttctcctatcgcggtgggatttg 40421920  T

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Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 155 - 325
Target Start/End: Complemental strand, 14685439 - 14685264
Alignment:
Q  155 tgaagtataacaaaagtgtccaccagggtcccataa-----agtataatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctg 249  Q
    ||||| ||| || ||||||||||| |||||||||||     |||||||||| |||||  ||||||||||||||||||||||||||||||||||||| |||    
T  14685439 tgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaacttatgccttgatcatataccctg 14685340  T
Q  250 tttgtagtgatatttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatggtagttccccttatctctg 325  Q
    ||||| ||||||||||| |        ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  14685339 tttgtggtgatattttttagcaaaaaatacaggatgattgatgtcgtggtgcccacagtagttccccttatctctg 14685264  T

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Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 155 - 325
Target Start/End: Complemental strand, 40422263 - 40422088
Alignment:
Q  155 tgaagtataacaaaagtgtccaccagggtcccataa-----agtataatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctg 249  Q
    ||||| ||| || ||||||||||| |||||||||||     |||||||||| |||||  ||||||||||||||||||||||||||||||||||||| |||    
T  40422263 tgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaacttatgccttgatcatataccctg 40422164  T
Q  250 tttgtagtgatatttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatggtagttccccttatctctg 325  Q
    ||||| ||||||||||| |        ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  40422163 tttgtggtgatattttttagcaaaaaatacaggatgattgatgtcgtggtgcccacagtagttccccttatctctg 40422088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 325
Target Start/End: Complemental strand, 21307282 - 21307120
Alignment:
Q  168 aagtgtccaccagggtcccataa-----agtataatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctgtttgtagtgatat 262  Q
    ||||||||||| |||||||||||     |||||||||| |||||  ||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  21307282 aagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaacttatgccttgatcatataccctgtttgtggtgatat 21307183  T
Q  263 ttttgatnnnnnnntacaggatgattgatgtcgtggtgcccatggtagttccccttatctctg 325  Q
    |||| |        ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  21307182 tttttagcaaaaaatacaggatgattgatgtcgtggtgcccacagtagttccccttatctctg 21307120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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