View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19032_low_20 (Length: 292)
Name: NF19032_low_20
Description: NF19032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19032_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 43162181 - 43161905
Alignment:
| Q |
1 |
atccttttgtattgtccttttatgtgcttagtattattactgatcctacattgtccnnnnnnnnnnaaaagagtgataaagatggaagtggtgcttggat |
100 |
Q |
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| T |
43162181 |
atccttttgtattgtcctgttatgtgctta---ttattacttatcctacattgtccttatttttg-aaaagagtgataaagatggaagtggtgcttggat |
43162086 |
T |
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| Q |
101 |
ttttggagaaacatgcaatatgccaacatgtgacagaaaagaagaatctagtatgaaaacagaaagagataatggcaacatgaaatgtcatcctcacttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43162085 |
ttttggagaaacatgcaatatgccaacatgtgacagaaaagaagaatctagtatgaaaacagaaagagataatggcaacatgaaatgtcatcctcacttg |
43161986 |
T |
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| Q |
201 |
aaccaactttggtagttgatcggttgaaatggggcaggaaaggactatgtgatgtatatataagtgccatccaaccatatt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43161985 |
aaccaactttggtagttgatcggttgaaatggggcaggaaaggactatgtgatgtatatataagtgccatccaaccatatt |
43161905 |
T |
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