View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19032_low_24 (Length: 256)

Name: NF19032_low_24
Description: NF19032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19032_low_24
NF19032_low_24
[»] chr8 (18 HSPs)
chr8 (31-240)||(37597313-37597522)
chr8 (1-138)||(36885377-36885512)
chr8 (1-138)||(30439395-30439531)
chr8 (31-138)||(16872045-16872152)
chr8 (31-138)||(42569618-42569725)
chr8 (1-135)||(16327043-16327177)
chr8 (1-135)||(7472919-7473051)
chr8 (75-139)||(23792978-23793042)
chr8 (1-95)||(41159821-41159914)
chr8 (31-94)||(35031430-35031493)
chr8 (74-138)||(12707268-12707332)
chr8 (31-138)||(29440411-29440519)
chr8 (69-136)||(4658145-4658212)
chr8 (33-138)||(9208141-9208247)
chr8 (31-136)||(14707234-14707339)
chr8 (74-134)||(26000658-26000719)
chr8 (68-137)||(36568073-36568142)
chr8 (74-138)||(45508651-45508715)
[»] chr3 (28 HSPs)
chr3 (1-138)||(24095295-24095431)
chr3 (1-138)||(6999215-6999352)
chr3 (31-138)||(51465803-51465910)
chr3 (31-138)||(41281610-41281717)
chr3 (1-138)||(55400045-55400181)
chr3 (31-135)||(21196199-21196303)
chr3 (31-138)||(36412198-36412306)
chr3 (1-135)||(46019508-46019641)
chr3 (1-138)||(49761353-49761489)
chr3 (31-136)||(52937258-52937363)
chr3 (31-138)||(34057842-34057949)
chr3 (31-138)||(46253697-46253802)
chr3 (1-138)||(3953364-3953500)
chr3 (1-138)||(24482852-24482988)
chr3 (31-138)||(46852021-46852128)
chr3 (1-138)||(50206859-50206995)
chr3 (31-137)||(26645101-26645207)
chr3 (1-137)||(39697112-39697247)
chr3 (31-135)||(24480343-24480447)
chr3 (31-131)||(24645431-24645531)
chr3 (33-138)||(37410952-37411057)
chr3 (74-138)||(3281605-3281669)
chr3 (43-138)||(28435975-28436070)
chr3 (1-133)||(29573249-29573381)
chr3 (74-136)||(55282581-55282643)
chr3 (74-138)||(9158761-9158826)
chr3 (31-95)||(32759832-32759896)
chr3 (31-138)||(54694002-54694109)
[»] chr1 (37 HSPs)
chr1 (31-138)||(35136919-35137026)
chr1 (1-138)||(33358047-33358184)
chr1 (1-138)||(36577301-36577437)
chr1 (1-138)||(52362528-52362664)
chr1 (2-138)||(40316833-40316968)
chr1 (1-138)||(48326013-48326149)
chr1 (1-138)||(13489708-13489844)
chr1 (31-138)||(50328030-50328137)
chr1 (49-138)||(29154871-29154960)
chr1 (1-134)||(41507087-41507220)
chr1 (1-138)||(8200121-8200257)
chr1 (1-138)||(10889935-10890071)
chr1 (31-138)||(34254240-34254347)
chr1 (1-138)||(48220033-48220169)
chr1 (1-138)||(50781459-50781595)
chr1 (31-138)||(50881999-50882106)
chr1 (1-109)||(18336192-18336299)
chr1 (31-140)||(15015473-15015581)
chr1 (31-136)||(52714792-52714897)
chr1 (54-138)||(6143781-6143865)
chr1 (33-136)||(11823034-11823138)
chr1 (1-138)||(15704951-15705087)
chr1 (1-138)||(32914961-32915097)
chr1 (31-138)||(47721484-47721591)
chr1 (31-138)||(47728476-47728583)
chr1 (33-137)||(5485973-5486077)
chr1 (31-138)||(46543332-46543438)
chr1 (31-138)||(50824816-50824923)
chr1 (1-64)||(34040463-34040525)
chr1 (1-95)||(19969494-19969587)
chr1 (31-138)||(29147762-29147870)
chr1 (31-135)||(38713645-38713749)
chr1 (31-90)||(45383906-45383965)
chr1 (31-138)||(48624951-48625057)
chr1 (68-133)||(51436664-51436730)
chr1 (87-136)||(48263160-48263209)
chr1 (74-138)||(8447854-8447918)
[»] chr5 (31 HSPs)
chr5 (2-138)||(8675322-8675457)
chr5 (1-138)||(41175595-41175731)
chr5 (31-136)||(15952936-15953041)
chr5 (1-138)||(19481071-19481207)
chr5 (1-138)||(43441784-43441920)
chr5 (2-138)||(34124668-34124803)
chr5 (1-138)||(189592-189728)
chr5 (31-138)||(10649510-10649617)
chr5 (31-135)||(38704089-38704193)
chr5 (33-138)||(18397054-18397159)
chr5 (1-148)||(19839865-19840011)
chr5 (1-143)||(3640081-3640222)
chr5 (31-138)||(34270402-34270509)
chr5 (31-138)||(43213948-43214055)
chr5 (1-136)||(9226347-9226481)
chr5 (2-138)||(15478705-15478840)
chr5 (2-138)||(32912085-32912220)
chr5 (1-134)||(1839238-1839370)
chr5 (1-90)||(20770177-20770265)
chr5 (1-136)||(6446409-6446543)
chr5 (102-138)||(189523-189559)
chr5 (31-111)||(6292196-6292276)
chr5 (31-134)||(9939324-9939428)
chr5 (33-136)||(43154137-43154240)
chr5 (33-135)||(15008442-15008544)
chr5 (1-134)||(6940042-6940175)
chr5 (1-134)||(18695364-18695497)
chr5 (68-133)||(30004685-30004750)
chr5 (31-95)||(9581654-9581718)
chr5 (31-138)||(30640865-30640972)
chr5 (1-62)||(40364614-40364675)
[»] chr4 (33 HSPs)
chr4 (31-136)||(46405865-46405970)
chr4 (1-138)||(22819695-22819831)
chr4 (1-139)||(13139194-13139330)
chr4 (2-139)||(26718415-26718551)
chr4 (2-139)||(26731043-26731179)
chr4 (31-138)||(2999187-2999294)
chr4 (31-138)||(12138928-12139035)
chr4 (1-138)||(31657692-31657828)
chr4 (33-135)||(56271437-56271539)
chr4 (39-140)||(45143560-45143661)
chr4 (39-140)||(45152329-45152430)
chr4 (54-138)||(17683439-17683523)
chr4 (1-138)||(13086068-13086204)
chr4 (31-138)||(14010007-14010114)
chr4 (1-138)||(39344869-39345005)
chr4 (33-138)||(12799791-12799896)
chr4 (39-135)||(38715330-38715427)
chr4 (34-138)||(1815890-1815994)
chr4 (31-135)||(18882867-18882971)
chr4 (1-95)||(28657373-28657466)
chr4 (1-134)||(52846122-52846252)
chr4 (1-90)||(28458314-28458402)
chr4 (31-138)||(32696256-32696363)
chr4 (1-138)||(43769757-43769893)
chr4 (1-134)||(42815450-42815583)
chr4 (31-87)||(27326692-27326748)
chr4 (1-133)||(37514025-37514157)
chr4 (74-138)||(47099138-47099202)
chr4 (31-138)||(51887738-51887844)
chr4 (31-129)||(49896564-49896662)
chr4 (1-86)||(36123401-36123485)
chr4 (31-138)||(42667280-42667388)
chr4 (31-138)||(53654638-53654746)
[»] chr2 (41 HSPs)
chr2 (31-135)||(7574510-7574614)
chr2 (1-138)||(23352796-23352930)
chr2 (1-138)||(40936953-40937089)
chr2 (33-138)||(24562906-24563011)
chr2 (31-135)||(5054683-5054787)
chr2 (1-138)||(2221039-2221175)
chr2 (1-138)||(6998957-6999093)
chr2 (31-138)||(15269936-15270043)
chr2 (31-138)||(32869901-32870008)
chr2 (1-136)||(13347705-13347840)
chr2 (74-138)||(36643973-36644037)
chr2 (1-90)||(42372525-42372614)
chr2 (31-138)||(6170705-6170812)
chr2 (31-136)||(2563779-2563884)
chr2 (39-136)||(22525887-22525984)
chr2 (31-136)||(36211951-36212056)
chr2 (1-138)||(42678795-42678932)
chr2 (31-135)||(9634328-9634432)
chr2 (31-138)||(13765475-13765582)
chr2 (53-138)||(3012741-3012826)
chr2 (1-148)||(34119531-34119677)
chr2 (31-136)||(39449342-39449447)
chr2 (31-138)||(17898122-17898230)
chr2 (1-138)||(36802942-36803078)
chr2 (39-138)||(4023239-4023338)
chr2 (31-138)||(29712053-29712159)
chr2 (31-138)||(39213659-39213766)
chr2 (1-61)||(40700241-40700301)
chr2 (31-133)||(9377531-9377633)
chr2 (2-138)||(35589276-35589411)
chr2 (74-135)||(1415930-1415991)
chr2 (31-140)||(37105713-37105822)
chr2 (34-90)||(4139244-4139300)
chr2 (1-86)||(29449257-29449341)
chr2 (1-62)||(42532703-42532764)
chr2 (31-133)||(28244135-28244236)
chr2 (69-135)||(44254714-44254780)
chr2 (49-134)||(11091252-11091337)
chr2 (74-135)||(14233610-14233671)
chr2 (31-95)||(6895969-6896033)
chr2 (31-91)||(44711925-44711985)
[»] chr7 (27 HSPs)
chr7 (1-138)||(7817683-7817818)
chr7 (1-138)||(41458642-41458778)
chr7 (31-140)||(10055519-10055628)
chr7 (31-138)||(28036819-28036926)
chr7 (31-138)||(43573432-43573539)
chr7 (1-131)||(44184455-44184584)
chr7 (1-138)||(11352863-11352999)
chr7 (31-136)||(3343221-3343326)
chr7 (31-140)||(35588778-35588887)
chr7 (31-135)||(3062405-3062509)
chr7 (31-135)||(21822491-21822595)
chr7 (1-136)||(11564939-11565072)
chr7 (1-135)||(35452464-35452598)
chr7 (31-95)||(3293204-3293268)
chr7 (2-87)||(18111551-18111636)
chr7 (31-138)||(12645799-12645906)
chr7 (31-138)||(13729801-13729908)
chr7 (74-135)||(25067341-25067402)
chr7 (31-136)||(42555639-42555744)
chr7 (31-138)||(41893990-41894097)
chr7 (31-136)||(21559873-21559978)
chr7 (31-136)||(42926214-42926320)
chr7 (1-88)||(46829525-46829611)
chr7 (74-138)||(21023006-21023070)
chr7 (31-95)||(31844537-31844601)
chr7 (31-95)||(43482598-43482662)
chr7 (31-138)||(47495045-47495153)
[»] chr6 (22 HSPs)
chr6 (1-138)||(13143271-13143407)
chr6 (31-136)||(1369435-1369540)
chr6 (1-138)||(32459405-32459542)
chr6 (31-138)||(754327-754434)
chr6 (1-138)||(35213450-35213586)
chr6 (1-138)||(6531069-6531208)
chr6 (1-138)||(18141190-18141326)
chr6 (31-135)||(9050208-9050313)
chr6 (31-131)||(2943509-2943609)
chr6 (1-135)||(20822761-20822893)
chr6 (31-138)||(33421835-33421941)
chr6 (75-138)||(3832582-3832645)
chr6 (31-133)||(5028160-5028262)
chr6 (74-135)||(32046816-32046877)
chr6 (1-138)||(2688953-2689089)
chr6 (31-95)||(14699596-14699660)
chr6 (31-138)||(868841-868948)
chr6 (31-134)||(31749440-31749543)
chr6 (74-138)||(11547418-11547482)
chr6 (31-91)||(14693188-14693248)
chr6 (31-131)||(26832721-26832821)
chr6 (31-138)||(28041702-28041810)
[»] scaffold0532 (1 HSPs)
scaffold0532 (1-138)||(11010-11146)
[»] scaffold0136 (1 HSPs)
scaffold0136 (31-138)||(38500-38607)
[»] scaffold0141 (1 HSPs)
scaffold0141 (31-138)||(12007-12114)
[»] scaffold0045 (1 HSPs)
scaffold0045 (31-95)||(41830-41894)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 37597313 - 37597522
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    |||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| |||| | ||||| |||||||| |||||||||||||||||    
T  37597313 actttatttctctattgctttgattttcgtgtaaatccctaccttttctttgtaaattatggttgtcttataagttgtcaactatatgattgttcaaata 37597412  T
Q  131 acactcctttataaataaaatgtatttatgtggtacatnnnnnnnnnttgtatttctatgtaataatgtttggaattgaacttaatttatgcctttttct 230  Q
    |||||||||||||||||||| |||||| ||||||| ||         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37597413 acactcctttataaataaaacgtatttctgtggtagataaaaaaaaattgtatttctatgtaataatgtttggaattgaacttaatttatgcctttttct 37597512  T
Q  231 ttagagaact 240  Q
    ||||||||||    
T  37597513 ttagagaact 37597522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 36885512 - 36885377
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| ||| |||| ||||||||||||||  | | ||||| ||||||||||||||||| |||| || |    
T  36885512 ctttctctctcatactcacattattttt--actttatctctttattgctttgattttcgtgtcaatacctactttttctttgtaaattatggttgtccca 36885415  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||| ||||| |||| ||| |||||||||||||||||||    
T  36885414 taagttgtccaccaaatggttgttcaaataacactcct 36885377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 30439531 - 30439395
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||||||||||||||| | |  |  ||||||||||||||||| |||| |  |    
T  30439531 ctttctctctcatactcacattatttttt-actttatctctctattgctttgattttcgtgcaaatactcattttttctttgtaaattatggttgtcaca 30439433  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||| || ||||||| ||| |||||||||||||||||||    
T  30439432 taagttatcaaccaaatggttgttcaaataacactcct 30439395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 16872152 - 16872045
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||||||||| |  | || ||||||||||||||||| |||| || | || |||| ||||| ||| |||||||||||    
T  16872152 actttatctctctattgctttgattttcgtgcaaatatcaactttttctttgtaaattatggttgtcccaaaagttgttaaccaaatggttgttcaaata 16872053  T
Q  131 acactcct 138  Q
    || |||||    
T  16872052 accctcct 16872045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 42569725 - 42569618
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||| |||| |||||||||||||| || |  | || |||||||| |||||||| |||| |||| ||||| ||||||| ||| |||||||||||    
T  42569725 actttatctctttattgctttgattttcgtgtaaatatcaactttttctttataaattatggttgtcctaaaaattatcaaccaaatggttgttcaaata 42569626  T
Q  131 acactcct 138  Q
    | ||||||    
T  42569625 atactcct 42569618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 16327177 - 16327043
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtcc-ctaccttttctttgtaaattatagttgccct 99  Q
    |||||||||||||||||||||||       ||||||| ||||||||| |||| ||||| ||||| | | |||  ||||||||||||||||||||||  |     
T  16327177 ctttctctctcatactcacattacttttt-actttatctctctattattttggttttcttgcaaatacactattttttctttgtaaattatagttgttcc 16327079  T
Q  100 ataaattgtcaaccatatgattgttcaaataacact 135  Q
    | ||||| | || || ||||||||||||||||||||    
T  16327078 aaaaattattaatcaaatgattgttcaaataacact 16327043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 7473051 - 7472919
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||  ||||||||||| | ||||  ||||||||||||||||| |||   |||    
T  7473051 ctttctctctcatactcacattacttttt-actttatctctctattgctttagttttcgtgcaaatacctat-ttttctttgtaaattatggttattcta 7472954  T
Q  101 taaattgtcaaccatatgattgttcaaataacact 135  Q
     || |||||||||| ||  ||||||||||||||||    
T  7472953 aaagttgtcaaccaaatagttgttcaaataacact 7472919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 23793042 - 23792978
Alignment:
Q  75 tttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcctt 139  Q
    ||||||||||||||||||||| |  ||||||||||||||| ||| ||||| ||||||||| ||||    
T  23793042 tttctttgtaaattatagttgtctcataaattgtcaaccaaatggttgttgaaataacacccctt 23792978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 41159914 - 41159821
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg 95  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| | ||||  ||||||||||||||||| ||||    
T  41159914 ctttctctctcatactcacattatttttt-actttatctctctattgctttggttttcgtgcaaatacctattttttctttgtaaattatggttg 41159821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 35031493 - 35031430
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagtt 94  Q
    ||||||| |||||||| ||||||||| ||||||| |  |||| |||||||||||||||||||||    
T  35031493 actttatctctctattgctttgatttccgtgcaaatatctactttttctttgtaaattatagtt 35031430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 12707268 - 12707332
Alignment:
Q  74 ttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||||||||||||||| |||| || |||| |  ||||||| ||| |||||||||||||||||||    
T  12707268 ttttctttgtaaattatggttgtcccataagtgctcaaccaaatggttgttcaaataacactcct 12707332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 29440519 - 29440411
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatat-gattgttcaaat 129  Q
    ||||||| ||||||||  |||||||| ||||||| | | ||| |||||| | |||||||| |||| |   ||||||||||| || || ||||||||||||    
T  29440519 actttatctctctattgttttgatttccgtgcaaatacttactttttctgtataaattatggttgtcacgtaaattgtcaatcaaattgattgttcaaat 29440420  T
Q  130 aacactcct 138  Q
    |||||||||    
T  29440419 aacactcct 29440411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 4658212 - 4658145
Alignment:
Q  69 ctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactc 136  Q
    |||| ||||||||||||||||| |||| |||| || |||||||  | ||| |||||||||||||||||    
T  4658212 ctactttttctttgtaaattatggttgtcctaaaagttgtcaattaaatggttgttcaaataacactc 4658145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 9208141 - 9208247
Alignment:
Q  33 tttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatat-gattgttcaaataa 131  Q
    ||||| ||||||||  |||| ||| ||||||| | ||||| |||||||| || |||||||||| |  | || |||||||||| || | ||||||||||||    
T  9208141 tttatctctctattgttttggtttacgtgcaaatacctactttttctttatatattatagttgtcacaaaagttgtcaaccaaattggttgttcaaataa 9208240  T
Q  132 cactcct 138  Q
    |||||||    
T  9208241 cactcct 9208247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 14707339 - 14707234
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| || ||||| ||||||||||| ||  | | ||||| |||||||||||||||||  ||| |  |||| ||||| |||| ||  |||||||||||    
T  14707339 actttatctccctattgctttgattttcttgtcaatacctactttttctttgtaaattatgattgtctcataagttgtccaccaaatagttgttcaaata 14707240  T
Q  131 acactc 136  Q
    ||||||    
T  14707239 acactc 14707234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 26000658 - 26000719
Alignment:
Q  74 ttttctttgtaaat-tatagttgccctataaattgtcaaccatatgattgttcaaataacac 134  Q
    |||| ||||||||| |||||||| || ||||  ||||||||| |||||||||||||||||||    
T  26000658 ttttttttgtaaatatatagttgtcccataagatgtcaaccaaatgattgttcaaataacac 26000719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 36568073 - 36568142
Alignment:
Q  68 cctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcc 137  Q
    ||||| |||| | |||||||||| |||| || |||| ||||||| || ||| ||||||||||||||||||    
T  36568073 cctactttttttgtgtaaattatggttgtcccataagttgtcaatcaaatggttgttcaaataacactcc 36568142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 45508651 - 45508715
Alignment:
Q  74 ttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    |||| |||||||||||| |||| || ||||||| ||||| | ||  |||||||||||||||||||    
T  45508651 ttttttttgtaaattatggttgtcccataaattatcaactaaattgttgttcaaataacactcct 45508715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 24095431 - 24095295
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       |||||||||||||||| ||||| ||||||||||| | ||||| ||||||||||||||||| |||| | ||    
T  24095431 ctttctctctcatactcacattatttttt-actttatttctctattgctttggttttcgtgcaaatacctactttttctttgtaaattatggttgtcata 24095333  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| |||  ||||||||||||||||||    
T  24095332 aaagttgtcaaccaaatggatgttcaaataacactcct 24095295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 6999215 - 6999352
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||| |||||| |||||||||||       |||||||||||||||| ||||||||||||||||| | | ||  ||||| ||||||||||| |||| || |    
T  6999215 ctttttctctcttactcacattatttttttactttatttctctattgctttgattttcgtgcaaatacatattttttcattgtaaattatggttgtccca 6999314  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||| |||||||||| ||| |||||||||||||||||||    
T  6999315 taagttgtcaaccaaatggttgttcaaataacactcct 6999352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 51465910 - 51465803
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||||||||| | || || ||||||||||||||||| |||| || | || |||||||||| ||| |||||||||||    
T  51465910 actttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaata 51465811  T
Q  131 acactcct 138  Q
    ||||||||    
T  51465810 acactcct 51465803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 41281717 - 41281610
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||||||||||||  |||| |||| |||||| | ||||| |||| |||||||||| ||||||  | |||| |||||||||| |||||||||||||||    
T  41281717 actttatttctctattgttttggtttttgtgcaaatgcctactttttttttgtaaattttagttgttccataagttgtcaaccaaatgattgttcaaata 41281618  T
Q  131 acactcct 138  Q
    ||||||||    
T  41281617 acactcct 41281610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 55400045 - 55400181
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| | || |  |||||||| |||||||| |||| ||||    
T  55400045 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatggttgtccta 55400143  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| ||| |||||||||||||||||||    
T  55400144 aaagttgtcaaccaaatggttgttcaaataacactcct 55400181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 21196199 - 21196303
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||||||||||||||||||||| | | ||  |||||||||||||||||  ||  || |||||||||||| || ||| |||||||||||    
T  21196199 actttatctctctattactttgattttcgtgcaaatacatattttttctttgtaaattatgattatcccataaattgtcaatcaaatggttgttcaaata 21196298  T
Q  131 acact 135  Q
    |||||    
T  21196299 acact 21196303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 36412198 - 36412306
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtc-aaccatatgattgttcaaat 129  Q
    |||||||||||||||| ||||||||||||||||| | | ||   |||||||||||||||| |||| || |||| ||||| ||||| ||| ||||||||||    
T  36412198 actttatttctctattgctttgattttcgtgcaaatacatattctttctttgtaaattatggttgtcccataagttgtcaaaccaaatggttgttcaaat 36412297  T
Q  130 aacactcct 138  Q
    |||||||||    
T  36412298 aacactcct 36412306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 46019508 - 46019641
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||| ||| | |||| |||||||||||||||||| ||||  | |    
T  46019508 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtacaaatacctatcttttctttgtaaattatggttgttcca 46019606  T
Q  101 taaattgtcaaccatatgattgttcaaataacact 135  Q
     || |||||||||| ||| ||||||||||||||||    
T  46019607 aaagttgtcaaccaaatggttgttcaaataacact 46019641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 49761353 - 49761489
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| |||| |||||| | ||||| |||||||| ||||||||  ||| | |     
T  49761353 ctttctctctcatactcacattatttttt-actttatctctctattgctttggtttttgtgcaaatacctactttttctttataaattatgattgtcatg 49761451  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||| |||||||| | |||||||||||||||||||||||    
T  49761452 taagttgtcaactaaatgattgttcaaataacactcct 49761489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 52937258 - 52937363
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||||||||||||||||| |||||| | || |  ||||||||||||||||| |||| |  | ||||| ||||||| ||| |||||||||||    
T  52937258 actttatctctctattactttgatttttgtgcaaataccaattttttctttgtaaattatggttgtctcaaaaattatcaaccaaatggttgttcaaata 52937357  T
Q  131 acactc 136  Q
    ||||||    
T  52937358 acactc 52937363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 34057949 - 34057842
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| | |||||| ||||| ||||||||||| | || || |||||||| ||||||||||||| |||| || ||||||| || ||| ||||||||| |    
T  34057949 actttatctttctattgctttgtttttcgtgcaattaccaactttttctttataaattatagttgtcctaaaagttgtcaatcaaatggttgttcaaaca 34057850  T
Q  131 acactcct 138  Q
    ||||||||    
T  34057849 acactcct 34057842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 46253697 - 46253802
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||| ||||||||||| | || || ||||||||||||||||| |||| || | || ||||||| |  ||| |||||||||||    
T  46253697 actttatctctctattgctttggttttcgtgcaaataccaacattttctttgtaaattatggttgtcccaaaagttgtcaatc--atggttgttcaaata 46253794  T
Q  131 acactcct 138  Q
    ||||||||    
T  46253795 acactcct 46253802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 3953500 - 3953364
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||| ||| |||||||| ||||| ||||| ||||| |  | || |||||||| ||||||||  ||| |  |    
T  3953500 ctttctctctcatactcacattacttttt-actctatctctctattgctttggttttcatgcaaatatcaactttttctttataaattatgattgtctca 3953402  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     ||||||||||||| |||||||||||||||||||||||    
T  3953401 aaaattgtcaaccaaatgattgttcaaataacactcct 3953364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 24482988 - 24482852
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| ||| ||||  |||| ||||||||||| | || || |||||||||||| |||| |||| || |    
T  24482988 ctttctctctcatactcacattacttttt-actttatctctatattgttttggttttcgtgcaaataccaactttttctttgtaagttatggttgtccca 24482890  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||| ||||| ||| |||||||||||||||||||    
T  24482889 aaagttgtaaaccaaatggttgttcaaataacactcct 24482852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 46852128 - 46852021
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||||| ||||||  |||| ||||||||||| |  | || |||||||||||||||||  ||| || | || |||||||||| ||| |||||||||||    
T  46852128 actttatttgtctattgttttggttttcgtgcaaatatcaactttttctttgtaaattatgattgtcccaaaagttgtcaaccaaatggttgttcaaata 46852029  T
Q  131 acactcct 138  Q
    ||||||||    
T  46852028 acactcct 46852021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 50206995 - 50206859
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| ||||||||  |||| ||||||||||| |  | || ||||||||||||||||| |||| ||||    
T  50206995 ctttctctctcatactcacattacttttt-actttatctctctattgttttggttttcgtgcaaatatcaactttttctttgtaaattatggttgtccta 50206897  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||| | ||  ||||| |||||||||||||    
T  50206896 aaagttgtcaactaaatagttgtttaaataacactcct 50206859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 26645101 - 26645207
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    |||||||||||||||| ||||| ||||| ||||| |  |||| |||||||||||||||||  ||  || ||||||||||| ||| ||  |||||||||||    
T  26645101 actttatttctctattgctttggttttcatgcaaatatctactttttctttgtaaattatgattatcccataaattgtcatccaaatagttgttcaaata 26645200  T
Q  131 acactcc 137  Q
    | |||||    
T  26645201 atactcc 26645207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 39697247 - 39697112
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| |  | |  ||||||||||||||||| |||| || |    
T  39697247 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgcaaatatcaattttttctttgtaaattatggttgtccca 39697149  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcc 137  Q
     || ||||||| || ||  ||||||||||||||||||    
T  39697148 aaagttgtcaatcaaatagttgttcaaataacactcc 39697112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 24480447 - 24480343
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| | |||||||||||| |||| |||||| | ||||| |||||||||||||||||  |||  | | || || ||||||| || ||||||||||||    
T  24480447 actttatctatctattactttggtttttgtgcaaatacctactttttctttgtaaattatgattgtgcaaaaagttatcaaccaaataattgttcaaata 24480348  T
Q  131 acact 135  Q
    |||||    
T  24480347 acact 24480343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 24645431 - 24645531
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||||||  |||| ||||||||||||| ||||  ||||||||||||||||| |||| | || || ||||||||||  ||  ||||||||||    
T  24645431 actttatctctctattgttttggttttcgtgcaagtacctattttttctttgtaaattatggttgtcataaaagttgtcaaccaagtggatgttcaaata 24645530  T
Q  131 a 131  Q
    |    
T  24645531 a 24645531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 37410952 - 37411057
Alignment:
Q  33 tttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataac 132  Q
    ||||| ||| |||| |||||||||||| |||| | ||||| ||| ||||||||||||| ||||    |||  |||||||| | ||| |||||||||||||    
T  37410952 tttatctctttattgctttgattttcgcgcaaatacctacttttactttgtaaattatggttgtttcataggttgtcaactaaatggttgttcaaataac 37411051  T
Q  133 actcct 138  Q
    ||||||    
T  37411052 actcct 37411057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 3281669 - 3281605
Alignment:
Q  74 ttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||||||||||||||| |||| | | ||| ||| |||||| ||| |||||||||||||||||||    
T  3281669 ttttctttgtaaattatggttgtcatgtaagttgacaaccaaatggttgttcaaataacactcct 3281605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 28436070 - 28435975
Alignment:
Q  43 tattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccata-tgattgttcaaataacactcct 138  Q
    ||||||||||||||| |||||| | |||||  |||||||||||||||| |||| || | ||||| ||||||| | | |||||| |||||||||||||    
T  28436070 tattactttgatttttgtgcaacttcctactatttctttgtaaattat-gttgtcccacaaattatcaaccaaattaattgtttaaataacactcct 28435975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 29573381 - 29573249
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaa-ttatagttgccct 99  Q
    ||||||||||||||||||||| |       ||||||| |||||||| ||||||||||||||| |   ||||| ||| ||||||||| |||| |||| |      
T  29573381 ctttctctctcatactcacat-atgtttttactttatctctctattgctttgattttcgtgccaaaacctacttttcctttgtaaatttatggttgtcaa 29573283  T
Q  100 ataaattgtcaaccatatgattgttcaaataaca 133  Q
    |||||||||| | || ||| ||||||||||||||    
T  29573282 ataaattgtctatcaaatggttgttcaaataaca 29573249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 55282643 - 55282581
Alignment:
Q  74 ttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactc 136  Q
    |||||||||||||||| ||||| |  |||| |||||||||| ||| || ||||||||||||||    
T  55282643 ttttctttgtaaattacagttgtctcataagttgtcaaccaaatggttattcaaataacactc 55282581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 9158826 - 9158761
Alignment:
Q  74 ttttctttgtaaattatagttgccctataaattgtcaaccatatga-ttgttcaaataacactcct 138  Q
    ||||||||||||||||| |||| |  |||| |||||||||| || | |||||||||||||||||||    
T  9158826 ttttctttgtaaattatggttgtcacataagttgtcaaccaaattagttgttcaaataacactcct 9158761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 32759896 - 32759832
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg 95  Q
    ||||||| ||||| ||  |||||||||||||||| | | ||||||| |||||||| |||||||||    
T  32759896 actttatatctctgttgttttgattttcgtgcaaatacttacctttactttgtaacttatagttg 32759832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 54694109 - 54694002
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccct-ataaattgtcaaccatatgattgttcaaat 129  Q
    ||||||| |||||||| ||||||||||||||||| | ||||   |||||||  ||||||| |||| ||| |||| |||||||  | | || |||||||||    
T  54694109 actttatctctctattgctttgattttcgtgcaaatacctattctttctttacaaattatggttgtcctcataagttgtcaattaaagga-tgttcaaat 54694011  T
Q  130 aacactcct 138  Q
    |||||||||    
T  54694010 aacactcct 54694002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 35136919 - 35137026
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| |||||||||| |||||| | |  || ||||||||||||||||| |||| |||| ||||||||||||| |||||||||||||||    
T  35136919 actttatctctctattgctttgatttttgtgcaaatacaaactttttctttgtaaattatggttgtcctaaaaattgtcaaccaaatgattgttcaaata 35137018  T
Q  131 acactcct 138  Q
    ||||||||    
T  35137019 acactcct 35137026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 33358184 - 33358047
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||| |||  |||||||||||||||| | || || ||||||||||||||||| |||| |  |    
T  33358184 ctttctctctcatactcacattatttttttactttatctctcaattgatttgattttcgtgcaaatacccactttttctttgtaaattatggttgtcaca 33358085  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||| |||||||||| ||| |||||||||||||||||||    
T  33358084 taagttgtcaaccaaatggttgttcaaataacactcct 33358047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 36577437 - 36577301
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| ||| |||| ||||||||||||||||| | || || |||||||| |||||||| |||| ||||    
T  36577437 ctttctctctcatactcacattacttttt-actttatctctttattgctttgattttcgtgcaaataccaactttttctttataaattatggttgtccta 36577339  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| ||| |||||||||||||||||||    
T  36577338 aaagttgtcaaccaaatggttgttcaaataacactcct 36577301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 52362528 - 52362664
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| | || || |||||||| |||||||| |||| ||||    
T  52362528 ctttctctctcatactcacattatttttt-actttatctctctattgctttggttttcgtgcaaataccaactttttctttataaattatggttgtccta 52362626  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| ||| |||||||||||||||||||    
T  52362627 aaagttgtcaaccaaatggttgttcaaataacactcct 52362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 40316968 - 40316833
Alignment:
Q  2 tttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctat 101  Q
    ||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| | || || |||||||| |||||||| |||| ||||     
T  40316968 tttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgcaaataccaactttttctttataaattatggttgtcctaa 40316870  T
Q  102 aaattgtcaaccatatgattgttcaaataacactcct 138  Q
    || |||||||||| ||| |||||||||||||||||||    
T  40316869 aagttgtcaaccaaatggttgttcaaataacactcct 40316833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 48326013 - 48326149
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||| ||||||       ||||||| |||||||| ||||||||||||| ||| | || || ||||||||||||||||| |||| || |    
T  48326013 ctttctctctcatacttacattatttttttactttatctctctattgctttgattttcgtacaaataccaactttttctttgtaaattatggttgtcc-a 48326111  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| ||| |||||||||||||||||||    
T  48326112 aaagttgtcaaccaaatggttgttcaaataacactcct 48326149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 13489708 - 13489844
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| | || || ||||||||||||||||| |||| || |    
T  13489708 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtccca 13489806  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| ||  |||||||||||||||||||    
T  13489807 gaagttgtcaaccaaatagttgttcaaataacactcct 13489844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 50328137 - 50328030
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||| ||||||||||| | || || ||||||||||||||||| |||| || | || |||||||||| ||| |||||||||||    
T  50328137 actttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaata 50328038  T
Q  131 acactcct 138  Q
    ||||||||    
T  50328037 acactcct 50328030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 29154871 - 29154960
Alignment:
Q  49 tttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    |||| ||||||||||| | ||||| ||||||||||||||||| |||| || |||| |||||||||| ||| |||||||||||||||||||    
T  29154871 tttggttttcgtgcaaatacctacgttttctttgtaaattatcgttgtcccataagttgtcaaccaaatggttgttcaaataacactcct 29154960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 41507220 - 41507087
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| | ||||||| |||| ||||| ||  | | ||||| |||||||||||||||||||||| |  |    
T  41507220 ctttctctctcatactcacattatgttcttactttatctatctattattttggttttcatgtcaatacctactttttctttgtaaattatagttgtcaaa 41507121  T
Q  101 taaattgtcaaccatatgattgttcaaataacac 134  Q
    ||| |||||||||| ||| |||||||||||||||    
T  41507120 taagttgtcaaccaaatggttgttcaaataacac 41507087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 8200121 - 8200257
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       |||||||  ||||||| ||||| ||||||||||| | | ||| ||||||||||||||||| |||| || |    
T  8200121 ctttctctctcatactcacattatttttt-actttatccctctattgctttggttttcgtgcaactacgtactttttctttgtaaattatggttgtccca 8200219  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||| |||||||||| | |  ||||||||||||||||||    
T  8200220 taagttgtcaaccaaaaggctgttcaaataacactcct 8200257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 10890071 - 10889935
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||||||||||||||  | || || ||||||||||||||||| |||| |  |    
T  10890071 ctttctctctcatactcacattacttttt-actttatctctctattgctttgattttcgtgcacataccaactttttctttgtaaattatggttgtcaca 10889973  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| ||  |||||||||||||||||||    
T  10889972 aaagttgtcaaccaaatagttgttcaaataacactcct 10889935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 34254347 - 34254240
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||| |||| ||||| ||||||||||| | |  || |||||||||||||||||||||| || | || || ||||||| |||||||||||||||    
T  34254347 actttatctctttattgctttggttttcgtgcaaatacaaactttttctttgtaaattatagttgtcccaaaagttatcaaccaaatgattgttcaaata 34254248  T
Q  131 acactcct 138  Q
    ||||||||    
T  34254247 acactcct 34254240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 48220169 - 48220033
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| |||||||||| |||||| | || || ||||||||| | ||||| | |  || |    
T  48220169 ctttctctctcatactcacattatttttt-actttatctctctatttctttgatttttgtgcaaataccaactttttctttgaagattatggctttccca 48220071  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||| |||||||||| |||||||||||||||||||||||    
T  48220070 taagttgtcaaccaaatgattgttcaaataacactcct 48220033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 50781595 - 50781459
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| | || |  |||||||| ||||||||  ||| ||||    
T  50781595 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatgattgtccta 50781497  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || ||||| |||| ||| |||||||||||||||||||    
T  50781496 aaagttgtctaccaaatggttgttcaaataacactcct 50781459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 50882106 - 50881999
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||||||||||||||||||||| | |  |  |||||||| ||||||||  ||| |  |||||||||||| || ||| |||||||||||    
T  50882106 actttatctctctattactttgattttcgtgcaaatactcattttttctttataaattatgattgtcacataaattgtcaatcaaatggttgttcaaata 50882007  T
Q  131 acactcct 138  Q
    ||||||||    
T  50882006 acactcct 50881999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 18336192 - 18336299
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| |||||||||| |||||  | ||||||||||||||||||||||| ||||  |||    
T  18336192 ctttctctctcatactcacattagttttt-actttatctctctattgctttgatttttgtgcagatacctaccttttctttgtaaattatggttgttcta 18336290  T
Q  101 taaattgtc 109  Q
    ||| |||||    
T  18336291 taagttgtc 18336299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 15015473 - 15015581
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||||||  |||| ||||||||||| | || || ||||||||||||||||| |||| || || |||| ||||||| ||  |||||||||||    
T  15015473 actttatatctctattgttttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcccat-aattatcaaccaaatagttgttcaaata 15015571  T
Q  131 acactccttt 140  Q
    ||||||||||    
T  15015572 acactccttt 15015581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 52714897 - 52714792
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||||||  |||| ||||||||||| | || || ||||||||||||||||| |||| || | || ||||||| || ||| |||||||||||    
T  52714897 actttatctctctattgttttggttttcgtgcaattaccaactttttctttgtaaattattgttgtcccaaaagttgtcaatcaaatggttgttcaaata 52714798  T
Q  131 acactc 136  Q
    ||||||    
T  52714797 acactc 52714792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 6143781 - 6143865
Alignment:
Q  54 ttttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||||||||| | ||||| ||||||||||||||||| |||| | || |  |||||||||| |||||||||||||||||| ||||    
T  6143781 ttttcgtgcaaatacctactttttctttgtaaattatggttgtcttaaatgttgtcaaccaaatgattgttcaaataacaatcct 6143865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 11823034 - 11823138
Alignment:
Q  33 tttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccata-tgattgttcaaataa 131  Q
    ||||| ||||||||| |||||||| ||||||| |  ||||  ||||||| |||||||| |||| || ||||||||||||||| | |||| ||||||||||    
T  11823034 tttatctctctattattttgatttccgtgcaactatctactatttctttataaattatcgttgtccgataaattgtcaaccaaattgatggttcaaataa 11823133  T
Q  132 cactc 136  Q
    |||||    
T  11823134 cactc 11823138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 15705087 - 15704951
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       |||||||   ||||||  |||| ||||||||||| | || || |||||||| |||||||| |||| ||||    
T  15705087 ctttctctctcatactcacattacttttt-actttatcattctattgttttggttttcgtgcaaataccaactttttctttataaattatggttgtccta 15704989  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || || ||||||| ||| |||||||||||||||||||    
T  15704988 aaagttatcaaccaaatggttgttcaaataacactcct 15704951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 32915097 - 32914961
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| ||||||||  |||| ||||||||||| | || || |||||||||||||||||  |||  | |    
T  32915097 ctttctctctcatactcacattacttttt-actttatctctctattgttttggttttcgtgcaaataccaactttttctttgtaaattatgattgttcca 32914999  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| ||  |||||||||||||||||||    
T  32914998 aaagttgtcaaccaaatagttgttcaaataacactcct 32914961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 47721484 - 47721591
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||||||  | | | ||| ||||||||||||||||| |||| || |||| ||||| || | ||| ||||| |||||    
T  47721484 actttatctctctattgctttgattttcgtgtcaatacttactttttctttgtaaattatggttgtcccataagttgtccactaaatggttgtttaaata 47721583  T
Q  131 acactcct 138  Q
    ||||||||    
T  47721584 acactcct 47721591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 47728476 - 47728583
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||||||  | | | ||| ||||||||||||||||| |||| || |||| ||||| || | ||| ||||| |||||    
T  47728476 actttatctctctattgctttgattttcgtgtcaatacttactttttctttgtaaattatggttgtcccataagttgtccactaaatggttgtttaaata 47728575  T
Q  131 acactcct 138  Q
    ||||||||    
T  47728576 acactcct 47728583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 5485973 - 5486077
Alignment:
Q  33 tttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataac 132  Q
    ||||||| ||||||  ||||||||||||  || |  |||| ||||||||||||||||| ||||   ||||| |||||||  | |||||||||||||||||    
T  5485973 tttatttttctattgttttgattttcgtataattttctactttttctttgtaaattatggttgttttataagttgtcaagtaaatgattgttcaaataac 5486072  T
Q  133 actcc 137  Q
    |||||    
T  5486073 actcc 5486077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 46543438 - 46543332
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||| ||||||||||| |  | | ||||| ||| ||||||||| ||| || | ||||| ||||||| ||| |||||||||||    
T  46543438 actttatctctctattgctttggttttcgtgcaaatatc-aacttttttttttaaattataattgtcccaaaaattatcaaccaaatggttgttcaaata 46543340  T
Q  131 acactcct 138  Q
    ||||||||    
T  46543339 acactcct 46543332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 50824816 - 50824923
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||| ||||| ||  | | ||||| ||||||||||||||||| ||||    |||| ||||| |||| ||| |||||||||||    
T  50824816 actttatctctctattgctttggttttcatgtcaatacctactttttctttgtaaattatggttgtatcataagttgtccaccaaatggttgttcaaata 50824915  T
Q  131 acactcct 138  Q
    ||||||||    
T  50824916 acactcct 50824923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 34040525 - 34040463
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaa 64  Q
    |||||||||||||||||||||||       ||||||| ||||||||||||||||||||||||||    
T  34040525 ctttctctctcatactcacattatttttt-actttatctctctattactttgattttcgtgcaa 34040463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 19969587 - 19969494
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg 95  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||  | || || ||||||||||||||||| ||||    
T  19969587 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgcacataccaacgttttctttgtaaattatggttg 19969494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 29147870 - 29147762
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatat-gattgttcaaat 129  Q
    ||||||| ||||||||  |||| ||| ||||||| |   ||| ||| ||||||||||||| |||| |  ||||||| ||||||| || ||||||||||||    
T  29147870 actttatctctctattgttttggtttccgtgcaaatatttacttttcctttgtaaattatggttgtcacataaattatcaaccaaattgattgttcaaat 29147771  T
Q  130 aacactcct 138  Q
    |||||||||    
T  29147770 aacactcct 29147762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 38713645 - 38713749
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||| |||| ||||||||||||||||| | || |  |||||||| ||||||||  ||| | ||||| |||||| | | |||||| ||||||||    
T  38713645 actttatctctttattgctttgattttcgtgcaaatacccattttttctttataaattatgattgtcatataagttgtcagctaaatgatttttcaaata 38713744  T
Q  131 acact 135  Q
    |||||    
T  38713745 acact 38713749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 45383965 - 45383906
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattat 90  Q
    ||||||||||||||||| |||||||||||||||| |   ||  |||||||||||||||||    
T  45383965 actttatttctctattattttgattttcgtgcaaatatatattttttctttgtaaattat 45383906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 48624951 - 48625057
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||| ||||| | | ||| |||||||| |||||||| ||||    |||| ||||||| || || ||| ||||||||    
T  48624951 actttatctctctattgctttgattttcatgcaaatacatactttttctttataaattatggttgtttcataagttgtcaatcaaataatt-ttcaaata 48625049  T
Q  131 acactcct 138  Q
    ||||||||    
T  48625050 acactcct 48625057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 51436730 - 51436664
Alignment:
Q  68 cctaccttttctttgtaaat-tatagttgccctataaattgtcaaccatatgattgttcaaataaca 133  Q
    ||||| |||||||||||||| ||| |||| | ||||| |||||||||| || |||||||||||||||    
T  51436730 cctactttttctttgtaaatctatggttgtcatataagttgtcaaccaaattattgttcaaataaca 51436664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 48263209 - 48263160
Alignment:
Q  87 ttatagttgccctataaattgtcaaccatatgattgttcaaataacactc 136  Q
    ||||||||| |  |||||||||||| || |||||||||||||||||||||    
T  48263209 ttatagttgtcacataaattgtcaatcaaatgattgttcaaataacactc 48263160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 8447854 - 8447918
Alignment:
Q  74 ttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    |||||||||||||||||  ||| |  |||| || ||||| | |||||||||||||||||||||||    
T  8447854 ttttctttgtaaattatgattgtcacataagttatcaactaaatgattgttcaaataacactcct 8447918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 8675457 - 8675322
Alignment:
Q  2 tttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctat 101  Q
    ||||||||||||||||||||||       ||||||| |||||||| ||||||||||||||||| | || || ||||||||||||||||| |||| || |     
T  8675457 tttctctctcatactcacattacttttt-actttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtcccaa 8675359  T
Q  102 aaattgtcaaccatatgattgttcaaataacactcct 138  Q
    || |||||||||| ||| |||||||||||||||||||    
T  8675358 aagttgtcaaccaaatggttgttcaaataacactcct 8675322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 41175731 - 41175595
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||||| ||||||||| | || || ||||||||||||||||| |||| |  |    
T  41175731 ctttctctctcatactcacattatttttt-actttatctctctattgctttgatcttcgtgcaaatacccactttttctttgtaaattatggttgtcaca 41175633  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||| |||||||||| ||| |||||||||||||||||||    
T  41175632 taagttgtcaaccaaatggttgttcaaataacactcct 41175595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 15953041 - 15952936
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||||||||| | || || ||||||||||||||||| |||| |  |||| |||||||||| ||| |||||||||||    
T  15953041 actttatctctctattgctttgattttcgtgcaaatacccactttttctttgtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaata 15952942  T
Q  131 acactc 136  Q
    ||||||    
T  15952941 acactc 15952936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 19481207 - 19481071
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| ||||||||  |||| | ||||||||| | || || |||||||||||||||||||||| || |    
T  19481207 ctttctctctcatactcacattacttttt-actttatctctctattgttttggtcttcgtgcaaataccaactttttctttgtaaattatagttgtccca 19481109  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || || ||||||| |||||||||||||||||||||||    
T  19481108 aaagttatcaaccaaatgattgttcaaataacactcct 19481071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 43441784 - 43441920
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| | || |  ||||||||||||||||| |||| | ||    
T  43441784 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgcaaataccaattttttctttgtaaattatggttgtctta 43441882  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| ||| |||||||||||||||||||    
T  43441883 aaagttgtcaaccaaatggttgttcaaataacactcct 43441920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 34124668 - 34124803
Alignment:
Q  2 tttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctat 101  Q
    ||||||||||||||||||||||       |||||||||||||||| ||||| |||||||| || | || || ||||||||||||||||| |||| | ||     
T  34124668 tttctctctcatactcacattacttttt-actttatttctctattgctttggttttcgtgtaaataccaactttttctttgtaaattatggttgtcttaa 34124766  T
Q  102 aaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||||||||  | ||| |||||||||||||||||||    
T  34124767 aaattgtcaattaaatggttgttcaaataacactcct 34124803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 189728 - 189592
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| |  | || |||||||| ||||||||  ||| || |    
T  189728 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgcaaatatcaactttttctttataaattatgattgtccca 189630  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| |||||||||||||||||||||||    
T  189629 aaagttgtcaaccaaatgattgttcaaataacactcct 189592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 10649510 - 10649617
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||||||||  | || || ||||||||||||||||| |||| |  | || |||||||||| ||| |||||||||||    
T  10649510 actttatctctctattgctttgattttcgtgcacataccaactttttctttgtaaattatggttgtcacaaaagttgtcaaccaaatggttgttcaaata 10649609  T
Q  131 acactcct 138  Q
    ||||||||    
T  10649610 acactcct 10649617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 38704193 - 38704089
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||||| |||||| ||||||||||||||||| | || || ||||||||||||||||| |||| || | || |||| || || ||| |||||||||||    
T  38704193 actttatttttctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgttaatcaaatggttgttcaaata 38704094  T
Q  131 acact 135  Q
    |||||    
T  38704093 acact 38704089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 18397159 - 18397054
Alignment:
Q  33 tttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataac 132  Q
    ||||| |||||||| ||||| ||||||||||| | ||||  |||||||||||||||||| |||  | | ||||| ||||||| || ||||||||||||||    
T  18397159 tttatctctctattgctttggttttcgtgcaaatacctattttttctttgtaaattataattgttccaaaaattatcaaccaaataattgttcaaataac 18397060  T
Q  133 actcct 138  Q
    | ||||    
T  18397059 attcct 18397054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 19840011 - 19839865
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| |  | |  ||||||||||||||||| |||| || |    
T  19840011 ctttctctctcatactcacattatttttt-actttatatctctattgctttggttttcgtgcaaatatcaattttttctttgtaaattatggttgtccca 19839913  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcctttataaataa 148  Q
     || || ||||||| ||  ||||||||||||||| ||| |||||||||    
T  19839912 aaagttatcaaccaaatagttgttcaaataacacgcctctataaataa 19839865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 3640222 - 3640081
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| | |||||| ||||||||||| ||||| | || || |||||||| |||||||| |||| |  |    
T  3640222 ctttctctctcatactcacattatttttt-actttatctttctattgctttgattttcatgcaaatacccactttttctttataaattatggttgtcaca 3640124  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcctttata 143  Q
    ||| |||||||| | ||| | ||||||||||||||||| ||||    
T  3640123 taagttgtcaactaaatggtagttcaaataacactcctatata 3640081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 34270402 - 34270509
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||| || | ||| ||||||||||| | ||||| ||| ||||||||||||| |||| |  | || |||||||||| ||| |||||||||||    
T  34270402 actttatctctctgttgcattggttttcgtgcaaatacctacttttcctttgtaaattatggttgtctcaaaatttgtcaaccaaatggttgttcaaata 34270501  T
Q  131 acactcct 138  Q
    ||||||||    
T  34270502 acactcct 34270509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 43214055 - 43213948
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||| ||||  |||| ||||||||||| | ||||  |||||||| |||||||||||||   || || |||||||||| ||| |||||||||||    
T  43214055 actttatctctttattgttttggttttcgtgcaaatacctattttttctttataaattatagttgttttaaaagttgtcaaccaaatggttgttcaaata 43213956  T
Q  131 acactcct 138  Q
    ||||||||    
T  43213955 acactcct 43213948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 9226347 - 9226481
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| ||||||||  |||||||| ||||||| | | ||| |||||||||||||||||| ||| |  |    
T  9226347 ctttctctctcatactcacattattttt--actttatctctctattgttttgatttccgtgcaaatacttactttttctttgtaaattataattgtcaca 9226444  T
Q  101 taaattgtcaaccata-tgattgttcaaataacactc 136  Q
     || |||||||||| | || |||||||||||||||||    
T  9226445 aaagttgtcaaccaaattggttgttcaaataacactc 9226481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 15478705 - 15478840
Alignment:
Q  2 tttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctat 101  Q
    ||||||||||||||||||||||       ||||||| |||| |||  |||| ||||||||||| |  | || ||||||||||||||||| ||||  | |     
T  15478705 tttctctctcatactcacattatttttt-actttatctctcaattgttttggttttcgtgcaaatatcaactttttctttgtaaattatggttgttccaa 15478803  T
Q  102 aaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||||||||||| ||  |||||||||||||||||||    
T  15478804 aaattgtcaaccaaatagttgttcaaataacactcct 15478840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 32912085 - 32912220
Alignment:
Q  2 tttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctat 101  Q
    ||||||||||||||||||||||       ||||||||| ||||||  |||| |||||||| || | || || |||||||| ||||||||  ||| || |     
T  32912085 tttctctctcatactcacattacttttt-actttatttatctattgttttggttttcgtgtaaataccaactttttctttataaattatgattgtcccaa 32912183  T
Q  102 aaattgtcaaccatatgattgttcaaataacactcct 138  Q
    || |||||||||| ||| |||||||||||||||||||    
T  32912184 aagttgtcaaccaaatggttgttcaaataacactcct 32912220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 1839370 - 1839238
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| | ||||||  |||| ||||||||||| |  |||  ||||||||||||||||| |||| || |    
T  1839370 ctttctctctcatactcacattatttttt-actttatctttctattgttttggttttcgtgcaaatatctattttttctttgtaaattatggttgtccca 1839272  T
Q  101 taaattgtcaaccatatgattgttcaaataacac 134  Q
    |||||| ||||||| |||  | ||||||||||||    
T  1839271 taaattatcaaccaaatggcttttcaaataacac 1839238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20770177 - 20770265
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattat 90  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||||||||||||  | | ||||| |||||||||||||||||    
T  20770177 ctttctctctcatactcacattatttttt-actttatctctctattgctttgattttcgtgtcaatacctactttttctttgtaaattat 20770265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 6446543 - 6446409
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       |||||||||||||||| ||||  ||||||| ||| | | ||  |||| |||||||||||| ||||  | |    
T  6446543 ctttctctctcatactcacattacttttt-actttatttctctattgcttttgttttcgtacaaatacatattttttttttgtaaattatggttgttcaa 6446445  T
Q  101 taaattgtcaaccatatgattgttcaaataacactc 136  Q
     ||||||||||||| ||  ||||||||||| |||||    
T  6446444 aaaattgtcaaccaaattgttgttcaaatatcactc 6446409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 189559 - 189523
Alignment:
Q  102 aaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||||||||||| |||||||||||||||||||||||    
T  189559 aaattgtcaaccaaatgattgttcaaataacactcct 189523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 6292196 - 6292276
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaa 111  Q
    ||||||| ||||||||| |||||||||||| ||| | ||||   |||||||| ||||||| |||| ||| |||||||||||    
T  6292196 actttatctctctattattttgattttcgtacaaatacctattatttctttgcaaattatggttgtcctttaaattgtcaa 6292276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 9939428 - 9939324
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaa-ttatagttgccctataaattgtcaaccatatgattgttcaaat 129  Q
    ||||||| |||||||| ||||||||||||||| |   ||||| ||| ||||||||| |||| |||| |  |||||||||| | || ||| ||||||||||    
T  9939428 actttatctctctattgctttgattttcgtgccaaaacctacttttcctttgtaaatttatggttgtcaaataaattgtctatcaaatggttgttcaaat 9939329  T
Q  130 aacac 134  Q
    |||||    
T  9939328 aacac 9939324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 43154137 - 43154240
Alignment:
Q  33 tttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg-ccctataaattgtcaaccatatgattgttcaaataa 131  Q
    ||||| |||||||| ||||||||||||||||| | | ||   |||||||| ||||||| |||| ||||||||||||||||  | | | ||||||||||||    
T  43154137 tttatctctctattgctttgattttcgtgcaaatacttattctttctttgcaaattatggttgcccctataaattgtcaattaaaag-ttgttcaaataa 43154235  T
Q  132 cactc 136  Q
    |||||    
T  43154236 cactc 43154240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 15008544 - 15008442
Alignment:
Q  33 tttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataac 132  Q
    ||||| ||||||||  |||| ||||||||||| |  |||| |||  ||||||||||||  ||| |  |||| |||||||||| || ||||||||||||||    
T  15008544 tttatctctctattgttttggttttcgtgcaaatatctacttttcttttgtaaattattattgtcacataagttgtcaaccaaataattgttcaaataac 15008445  T
Q  133 act 135  Q
    |||    
T  15008444 act 15008442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 6940175 - 6940042
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaa-ttatagttgccct 99  Q
    ||||||||||||||||||||| |       ||||||| |||||||| ||||||||||||||| |   ||||| ||| ||||||||| |||| |||| |      
T  6940175 ctttctctctcatactcacat-atgtttttactttatctctctattgctttgattttcgtgccaaaacctacttttcctttgtaaatttatggttgtcaa 6940077  T
Q  100 ataaattgtcaaccatatgattgttcaaataacac 134  Q
    |||| ||||| | || ||| |||||||||||||||    
T  6940076 ataagttgtctatcaaatggttgttcaaataacac 6940042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 18695364 - 18695497
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaa-ttatagttgccct 99  Q
    ||||||||||||||||||||| |       ||||||| |||||||| ||||||||||||||| |   ||||| ||| ||||||||| |||| |||| |      
T  18695364 ctttctctctcatactcacat-atgtttttactttatctctctattgctttgattttcgtgctaaaacctacttttcctttgtaaatttatggttgtcaa 18695462  T
Q  100 ataaattgtcaaccatatgattgttcaaataacac 134  Q
    |||| ||||| | || ||| |||||||||||||||    
T  18695463 ataagttgtctatcaaatggttgttcaaataacac 18695497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 30004750 - 30004685
Alignment:
Q  68 cctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataaca 133  Q
    ||||| ||||||||||||||||||||||  | | || |||||||||| | | ||||||||||||||    
T  30004750 cctactttttctttgtaaattatagttgttccaaaagttgtcaaccaaacggttgttcaaataaca 30004685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 9581654 - 9581718
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg 95  Q
    ||||||| ||||||||  |||| ||| ||||||| | ||||| ||||||||||||||||| ||||    
T  9581654 actttatctctctattgttttggtttccgtgcaaatacctactttttctttgtaaattatggttg 9581718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 30640865 - 30640972
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg-ccctataaattgtcaaccatatgattgttcaaat 129  Q
    ||||||| |||||||| ||||||||||||| ||| | ||||   ||||||| |||||||| |||| ||| |||| |||||||  | | || |||||||||    
T  30640865 actttatctctctattgctttgattttcgtacaaatacctattctttctttataaattatggttgtccccataagttgtcaattaaagga-tgttcaaat 30640963  T
Q  130 aacactcct 138  Q
    |||||||||    
T  30640964 aacactcct 30640972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 40364614 - 40364675
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgc 62  Q
    |||||||||||||||||||||||       ||||| | ||||||||||||||||||| ||||    
T  40364614 ctttctctctcatactcacattatatttctactttctctctctattactttgatttttgtgc 40364675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 46405970 - 46405865
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||||||||| | || || ||||||||||||||||| |||| || | ||||| ||||||| |||||||||||||||    
T  46405970 actttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtccaaaaaattatcaaccaaatgattgttcaaata 46405871  T
Q  131 acactc 136  Q
    ||||||    
T  46405870 acactc 46405865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 22819695 - 22819831
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| ||| |||| ||||||||||||||||| | || || ||||||||||||||||| |||| || |    
T  22819695 ctttctctctcatactcacattacttttt-actttatctctttattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtccca 22819793  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| ||| |||||||||||||||||||    
T  22819794 aaagttgtcaaccaaatggttgttcaaataacactcct 22819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 13139194 - 13139330
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       | ||||| ||||||||  |||| ||||||||||| | || || |||||||||||||||||||||| || |    
T  13139194 ctttctctctcatactcacattaccttttaa-tttatctctctatttttttggttttcgtgcaaataccaactttttctttgtaaattatagttgtcc-a 13139291  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcctt 139  Q
     ||||| ||||||| ||| ||||||||||||||||||||    
T  13139292 aaaattatcaaccaaatggttgttcaaataacactcctt 13139330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 26718415 - 26718551
Alignment:
Q  2 tttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctat 101  Q
    ||||||||||||||||||||||       ||||||| |||||||||||||| |||| |||||| | || || |||||||||||||||||  ||| || |     
T  26718415 tttctctctcatactcacattacttttt-actttatctctctattactttgttttttgtgcaaataccaactttttctttgtaaattatgattgtcccaa 26718513  T
Q  102 aaattgtcaaccatatgattgttcaaataacactcctt 139  Q
    ||||| ||||||| ||| || |||||||||||||||||    
T  26718514 aaattatcaaccaaatggttattcaaataacactcctt 26718551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 26731043 - 26731179
Alignment:
Q  2 tttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctat 101  Q
    ||||||||||||||||||||||       ||||||| |||||||||||||| |||| |||||| | || || |||||||||||||||||  ||| || |     
T  26731043 tttctctctcatactcacattacttttt-actttatctctctattactttgttttttgtgcaaataccaactttttctttgtaaattatgattgtcccaa 26731141  T
Q  102 aaattgtcaaccatatgattgttcaaataacactcctt 139  Q
    ||||| ||||||| ||| || |||||||||||||||||    
T  26731142 aaattatcaaccaaatggttattcaaataacactcctt 26731179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 2999187 - 2999294
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||| ||||| ||||| | || || ||||||||||||||||| |||| |||| || |||||||  | ||| |||||||||||    
T  2999187 actttatctctctattgctttggttttcatgcaaataccaactttttctttgtaaattatggttgtcctaaaagttgtcaattaaatggttgttcaaata 2999286  T
Q  131 acactcct 138  Q
    ||||||||    
T  2999287 acactcct 2999294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 12138928 - 12139035
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||||||||||||||||| |||||| | ||||| ||||||||||||||||| ||||    |||| || |||| || ||| |||||||||||    
T  12138928 actttatctctctattactttgatttttgtgcaaatacctactttttctttgtaaattatggttgttacataagttatcaatcaaatggttgttcaaata 12139027  T
Q  131 acactcct 138  Q
    ||| ||||    
T  12139028 acattcct 12139035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 31657692 - 31657828
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| |||||||| || | || || |||||| ||||||| || |||| || |    
T  31657692 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgtaaataccaactttttctatgtaaatgatggttgtccca 31657790  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     ||||||||||||| ||| ||||| |||||||||||||    
T  31657791 aaaattgtcaaccaaatggttgtttaaataacactcct 31657828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 56271437 - 56271539
Alignment:
Q  33 tttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataac 132  Q
    ||||| |||||||| ||||| ||||||||||| | ||||| ||||||||||||||||| |||| | || || ||||||| || |||  ||||||||||||    
T  56271437 tttatctctctattgctttggttttcgtgcaaatacctactttttctttgtaaattatggttgtcataaaagttgtcaaacaaatggatgttcaaataac 56271536  T
Q  133 act 135  Q
    |||    
T  56271537 act 56271539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 45143661 - 45143560
Alignment:
Q  39 tctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||||||| |||| ||||||||||| | || || ||||||||||||||||| |||| || | || |||||||||| ||  |||||||||||||| ||||    
T  45143661 tctctattattttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatagttgttcaaataacaatcct 45143562  T
Q  139 tt 140  Q
    ||    
T  45143561 tt 45143560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 45152430 - 45152329
Alignment:
Q  39 tctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||||||| |||| ||||||||||| | || || ||||||||||||||||| |||| || | || |||||||||| ||  |||||||||||||| ||||    
T  45152430 tctctattattttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatagttgttcaaataacaatcct 45152331  T
Q  139 tt 140  Q
    ||    
T  45152330 tt 45152329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 17683439 - 17683523
Alignment:
Q  54 ttttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||||||||| | || || ||||||||||||||||| |||| || | || |||||||||| ||| |||||||||||||||||||    
T  17683439 ttttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 17683523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 13086068 - 13086204
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       | ||||| |||||||| ||||||||||||||||| | || || ||||||||||||||||| |||| || |    
T  13086068 ctttctctctcatactcacattacttttt-attttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtccca 13086166  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || || | || || | | |||||||||||||||||||    
T  13086167 aaagttattaatcaaacggttgttcaaataacactcct 13086204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 14010114 - 14010007
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||||||| |||| ||||||||||| | || |  |||||||| |||||||| |||| || | || |||||||||| || ||| ||||||||    
T  14010114 actttatctctctattattttggttttcgtgcaaataccaattttttctttataaattatggttgtcccaaaagttgtcaaccaaataattattcaaata 14010015  T
Q  131 acactcct 138  Q
    ||||||||    
T  14010014 acactcct 14010007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 39345005 - 39344869
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| | || |  |||||||||||||||||  ||| |  |    
T  39345005 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgcaaataccaattttttctttgtaaattatgattgtctca 39344907  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || || ||||||| ||| |||||||||||||||||||    
T  39344906 aaagttatcaaccaaatggttgttcaaataacactcct 39344869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 12799791 - 12799896
Alignment:
Q  33 tttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataac 132  Q
    |||||||||||| | |||||||||||||| || | ||||  |||||||||||||||||  ||| |  |||| |||| ||||| ||| |||||||||||||    
T  12799791 tttatttctctaatgctttgattttcgtgtaaatacctattttttctttgtaaattatgattgtcacataagttgttaaccaaatggttgttcaaataac 12799890  T
Q  133 actcct 138  Q
    | ||||    
T  12799891 attcct 12799896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 38715330 - 38715427
Alignment:
Q  39 tctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccata-tgattgttcaaataacact 135  Q
    |||||||| ||||| ||| ||||||| |  ||||||||||||| ||||||||||||| |  | || |||||||||| | |||||||||||||||||||    
T  38715330 tctctattgctttggtttccgtgcaaataactaccttttctttataaattatagttgtcacacaagttgtcaaccaaattgattgttcaaataacact 38715427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 1815994 - 1815890
Alignment:
Q  34 ttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataaca 133  Q
    |||| ||||||||  ||||||||| |||||| |  | || ||||||||||||||||| | || |  |||| |||||||||| ||| ||||||||||||||    
T  1815994 ttatctctctattgttttgatttttgtgcaaatatccactttttctttgtaaattatggctgtcacataagttgtcaaccagatggttgttcaaataaca 1815895  T
Q  134 ctcct 138  Q
    |||||    
T  1815894 ctcct 1815890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 18882971 - 18882867
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||||| ||| | ||||  |||||||||||||||||  ||   | | || |||||||||| ||| |||||||||||    
T  18882971 actttatctctctattgctttgattttcgtacaaatacctattttttctttgtaaattatgatttttccaaaagttgtcaaccaaatggttgttcaaata 18882872  T
Q  131 acact 135  Q
    |||||    
T  18882871 acact 18882867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 28657466 - 28657373
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg 95  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||| ||||||| | ||||| ||||||||||||||||| ||||    
T  28657466 ctttctctctcatactcacattatttttt-actttatctctctattgctttggtttccgtgcaaatacctacgttttctttgtaaattatggttg 28657373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 52846252 - 52846122
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       |||||||  ||||||| ||||| ||||||||||| | |  || |||||||||||||||||  ||| ||||    
T  52846252 ctttctctctcatactcacattacttttt-actttat--ctctattgctttggttttcgtgcaaatacaaactttttctttgtaaattatgattgtccta 52846156  T
Q  101 taaattgtcaaccatatgattgttcaaataacac 134  Q
     |||||||||| || ||  |||||||||||||||    
T  52846155 aaaattgtcaatcaaatagttgttcaaataacac 52846122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28458402 - 28458314
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattat 90  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||||||||||||  | | ||||| |||||||||||||||||    
T  28458402 ctttctctctcatactcacattatttttt-actttatctctctattgctttgattttcgtgtcaatacctactttttctttgtaaattat 28458314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 32696256 - 32696363
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||| |||| ||||||||||||||| | |  |||| ||||||||||||||||| |||| ||  ||| ||||| ||||  || |||||||||||    
T  32696256 actttatctctttattgctttgattttcgtgccaatatctactttttctttgtaaattatggttgtcccttaagttgtccaccaattggttgttcaaata 32696355  T
Q  131 acactcct 138  Q
    ||| ||||    
T  32696356 acattcct 32696363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 43769757 - 43769893
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| ||| ||||  ||| |||||||||||| | || || ||||||||||||||||| |||| |  |    
T  43769757 ctttctctctcatactcacattatttttt-actttatctctttattgttttaattttcgtgcaaatacccactttttctttgtaaattatggttgtcgca 43769855  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||| || ||||| | ||  |||||||||||||||||||    
T  43769856 taagttatcaacaaaatagttgttcaaataacactcct 43769893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 42815450 - 42815583
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaa-ttatagttgccct 99  Q
    ||||||||||||||||||||| |       ||||||| |||||||| |||||||||||||||||   ||||| ||| ||||||||| |||| |||| |      
T  42815450 ctttctctctcatactcacat-atgtttttactttatctctctattgctttgattttcgtgcaaaaacctacttttcctttgtaaatttatggttgtcaa 42815548  T
Q  100 ataaattgtcaaccatatgattgttcaaataacac 134  Q
    |||| ||||| | || ||| |||||||||||||||    
T  42815549 ataagttgtctatcaaatggttgttcaaataacac 42815583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 27326748 - 27326692
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaat 87  Q
    |||||||||||||||| ||||| ||||||||||| | || || ||||||||||||||    
T  27326748 actttatttctctattgctttggttttcgtgcaaataccaactttttctttgtaaat 27326692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 37514157 - 37514025
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaa-ttatagttgccct 99  Q
    ||||||||||||||||||||| |       ||||||| |||||||| ||||||||||||||| |   ||||| ||||||||||||| |||| |||| |      
T  37514157 ctttctctctcatactcacat-atgtttttactttatctctctattgctttgattttcgtgccaaaacctactttttctttgtaaatttatggttgtcaa 37514059  T
Q  100 ataaattgtcaaccatatgattgttcaaataaca 133  Q
    ||||||| || | || ||| ||||||||||||||    
T  37514058 ataaattctctatcaaatggttgttcaaataaca 37514025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 47099138 - 47099202
Alignment:
Q  74 ttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||||||||||||||| |||| || | || || ||||||| ||| |||||||||||||||||||    
T  47099138 ttttctttgtaaattatggttgtcccaaaagttatcaaccaaatggttgttcaaataacactcct 47099202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 51887738 - 51887844
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||||||  |||||||||||||||| | | ||   |||||||| ||||||| |||| ||||||| |||||||  | | | |||||||||||    
T  51887738 actttatctctctattgttttgattttcgtgcaaatacatattctttctttgcaaattatggttgtcctataagttgtcaatta-aaggttgttcaaata 51887836  T
Q  131 acactcct 138  Q
    ||||||||    
T  51887837 acactcct 51887844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 49896662 - 49896564
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaat 129  Q
    ||||||| |||||||| ||||||||||||||  | | || || ||||||||||||||||| |||| |  || | ||||| |||| ||| ||||||||||    
T  49896662 actttatctctctattgctttgattttcgtgtcaataccaactttttctttgtaaattatggttgtctcatgagttgtccaccaaatggttgttcaaat 49896564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 36123485 - 36123401
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaa 86  Q
    |||||||||||||||| ||||||       ||||| | ||||||||||||||||||| |||||| | | || ||||||||||||||    
T  36123485 ctttctctctcatacttacattatatttttactttctctctctattactttgatttttgtgcaaatgcata-cttttctttgtaaa 36123401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 42667280 - 42667388
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatat-gattgttcaaat 129  Q
    ||||||| ||||||||  |||| ||| |||| || | | ||| |||||||| |||||||| |||| |  |||| |||||||||| || ||||||| ||||    
T  42667280 actttatctctctattgttttggtttccgtgtaaatacttactttttctttataaattatggttgtcgcataagttgtcaaccaaattgattgtttaaat 42667379  T
Q  130 aacactcct 138  Q
    |||||||||    
T  42667380 aacactcct 42667388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 53654746 - 53654638
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccata-tgattgttcaaat 129  Q
    ||||||| |||| ||||| ||  |||| |||||| | |||||  |||||||||||||||| |||| || ||||||| |||| || | || || |||||||    
T  53654746 actttatctctccattacgttagtttttgtgcaactacctactatttctttgtaaattatggttgtcccataaattatcaatcaaattggttattcaaat 53654647  T
Q  130 aacactcct 138  Q
    |||||||||    
T  53654646 aacactcct 53654638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 7574510 - 7574614
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||||||||||||||||||||| | ||||  ||||| ||||||||||||||||  | | ||||||||||||| ||| |||||||||||    
T  7574510 actttatctctctattactttgattttcgtgcaaatacctattttttccttgtaaattatagttgttccaaaaattgtcaaccaaatggttgttcaaata 7574609  T
Q  131 acact 135  Q
    |||||    
T  7574610 acact 7574614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 23352930 - 23352796
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       |||||||  ||||||| ||||| ||||||||||| | | ||| ||||||||||||||||| |||| || |    
T  23352930 ctttctctctcatactcacattatttttt-actttat--ctctattgctttggttttcgtgcaaatacatactttttctttgtaaattatggttgtccca 23352834  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||| |||||||||| ||| |||||||||||||||||||    
T  23352833 taagttgtcaaccaaatggttgttcaaataacactcct 23352796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 40937089 - 40936953
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||||||||||||||| | || || ||||||||||||||||| |||| |  |    
T  40937089 ctttctctctcatactcacattatttttt-actttatctctctattgctttgattttcgtgcaaatacccactttttctttgtaaattatggttgtcaca 40936991  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    |||||||||| | | ||| || ||||||||||||||||    
T  40936990 taaattgtcagctaaatggttattcaaataacactcct 40936953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 24563011 - 24562906
Alignment:
Q  33 tttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataac 132  Q
    ||||| |||||||| ||||| |||||||| || | || ||||||||||| |||||||| |||| |||| || |||||||||| ||| |||||||||||||    
T  24563011 tttatctctctattgctttggttttcgtgtaaataccaaccttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaataac 24562912  T
Q  133 actcct 138  Q
    ||||||    
T  24562911 actcct 24562906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 5054683 - 5054787
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||||||||| | ||||| ||||||||||||||||| |||| |  |||| |||||||||| ||  || ||||||||    
T  5054683 actttatctctctattgctttgattttcgtgcaaatacctactttttctttgtaaattattgttgtcacataagttgtcaaccaaatagttattcaaata 5054782  T
Q  131 acact 135  Q
    |||||    
T  5054783 acact 5054787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 2221039 - 2221175
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||||||| ||||||| | ||||| |||||||| |||||||| |||  |  |    
T  2221039 ctttctctctcatactcacattatttttc-actttatctctctattgctttgatttccgtgcaaatacctactttttctttataaattatggttatcaca 2221137  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||| |||||||| | || ||||||||||||||||||||    
T  2221138 taagttgtcaacaaaattattgttcaaataacactcct 2221175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 6999093 - 6998957
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| | || |  |||||||| |||||||| |||| ||||    
T  6999093 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatggttgtccta 6998995  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| ||| ||||| |||||||||||||    
T  6998994 aaagttgtcaaccaaatggttgtttaaataacactcct 6998957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 15269936 - 15270043
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||||||||| | ||||| ||||||||||||||||| |||  | || || || ||||||| |||  ||||||||||    
T  15269936 actttatctctctattgctttgattttcgtgcaaatacctactttttctttgtaaattatggttatcataaaagttatcaaccaaatggatgttcaaata 15270035  T
Q  131 acactcct 138  Q
    ||||||||    
T  15270036 acactcct 15270043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 32869901 - 32870008
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||| |||| ||||| ||||||||||| | || |  ||||||||||||||||| |||| || | ||||||||||||| ||| |||||||||||    
T  32869901 actttatctctttattgctttggttttcgtgcaaataccaattttttctttgtaaattatggttgtcccaaaaattgtcaaccaaatggttgttcaaata 32870000  T
Q  131 acactcct 138  Q
    ||||||||    
T  32870001 acactcct 32870008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 13347840 - 13347705
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctacct-tttctttgtaaattatagttgccct 99  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| | || || | ||| |||||||||||| |||| ||     
T  13347840 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgcaattaccaacttatttttttgtaaattatggttgtccc 13347742  T
Q  100 ataaattgtcaaccatatgattgttcaaataacactc 136  Q
    | ||||||||||||| ||| |||||||||||||||||    
T  13347741 aaaaattgtcaaccaaatggttgttcaaataacactc 13347705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 36644037 - 36643973
Alignment:
Q  74 ttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||||||||||||||| |||| || ||||||||||||||| ||| |||||||||||||||||||    
T  36644037 ttttctttgtaaattatggttgtcccataaattgtcaaccaaatggttgttcaaataacactcct 36643973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 42372525 - 42372614
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattat 90  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||||||| ||||||| | |||||||||||| ||||||||||    
T  42372525 ctttctctctcatactcacattatttttttactttatctctctattcctttgatttccgtgcaaatacctaccttttctctgtaaattat 42372614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 6170705 - 6170812
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||| ||||||||||| | || |  |||| ||| |||||||| |||| |||| || |||||||||| ||| |||||||||||    
T  6170705 actttatctctctattgctttggttttcgtgcaaataccaattttttttttataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaata 6170804  T
Q  131 acactcct 138  Q
    ||||||||    
T  6170805 acactcct 6170812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 2563779 - 2563884
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| | ||||||  |||| ||||||||||| | || || |||||||| ||||||||  ||| |||| || |||||||||| |||||||||||||||    
T  2563779 actttatctttctattgttttggttttcgtgcaaataccaactttttctttataaattatgattgtcctaaaagttgtcaaccaaatgattgttcaaata 2563878  T
Q  131 acactc 136  Q
    ||||||    
T  2563879 acactc 2563884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 22525984 - 22525887
Alignment:
Q  39 tctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactc 136  Q
    |||||||| ||||||||||||||||| | ||||| ||||||||||||||||| |||| |  | || || |||| || ||| |||||||||||||||||    
T  22525984 tctctattgctttgattttcgtgcaaatgcctactttttctttgtaaattatggttgtctcaaaagttatcaatcaaatggttgttcaaataacactc 22525887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 36212056 - 36211951
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||||||||||||||||||||| |   ||| |||||||| ||||||||  ||| |  |||| || ||||||| ||| |||||||||||    
T  36212056 actttatctctctattactttgattttcgtgcaaatatttactttttctttataaattatgattgtcacataatttatcaaccaaatggttgttcaaata 36211957  T
Q  131 acactc 136  Q
    ||||||    
T  36211956 acactc 36211951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 42678795 - 42678932
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctacctttt-ctttgtaaattatagttgccct 99  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||| ||||||| | ||||| |||| ||||||||||||| |||| |      
T  42678795 ctttctctctcatactcacattatttttt-actttatctctctattgctttggtttccgtgcaaatacctacttttttctttgtaaattatggttgtcac 42678893  T
Q  100 ataaattgtcaacca-tatgattgttcaaataacactcct 138  Q
    | ||||||||||||| | ||||||||||||||||||||||    
T  42678894 a-aaattgtcaaccaatttgattgttcaaataacactcct 42678932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 9634432 - 9634328
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||| ||||  |||| ||||||||||| | || || ||||||||||||||||| ||||  | | || |||||||||| |||||||||||||||    
T  9634432 actttatctctatattgttttggttttcgtgcaaataccaactttttctttgtaaattatggttgttcaaaaagttgtcaaccaaatgattgttcaaata 9634333  T
Q  131 acact 135  Q
    |||||    
T  9634332 acact 9634328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 13765475 - 13765582
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| | || ||| ||||| ||||||||||| | || || |||| |||||||||||| |||| || | || |||||||||| ||| |||||||||||    
T  13765475 actttatctttcgattgctttggttttcgtgcaaataccaactttttatttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaata 13765574  T
Q  131 acactcct 138  Q
    ||||||||    
T  13765575 acactcct 13765582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 3012826 - 3012741
Alignment:
Q  53 attttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||| |||||| | ||||| ||||||||  ||||||| |||| || |||| |||||||||| ||| |||||||||||||||||||    
T  3012826 atttttgtgcaaatacctactttttctttaaaaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcct 3012741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 34119677 - 34119531
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| ||||||||  |||||||||||||  | | | ||| |||||||||||||||||   || |  |    
T  34119677 ctttctctctcatactcacattatttttt-actttatctctctattgttttgattttcgtgtgaatacttactttttctttgtaaattatgagtgtctca 34119579  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcctttataaataa 148  Q
    ||| |||||||||| ||| |||||||||| |||||||| || ||||||    
T  34119578 taagttgtcaaccaaatggttgttcaaattacactcctctaaaaataa 34119531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 39449342 - 39449447
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||||||||| | || || |||||||| ||||| || ||||  | | |||||||||| || ||| ||||| |||||    
T  39449342 actttatctctctattgctttgattttcgtgcaaataccaactttttctttataaatgatggttgttccaaaaattgtcaatcaaatggttgtttaaata 39449441  T
Q  131 acactc 136  Q
    ||||||    
T  39449442 acactc 39449447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 17898230 - 17898122
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccata-tgattgttcaaat 129  Q
    ||||||| |||||||| ||||||||| ||||||| |  ||||  |||||||||||||||| |||  || |||| |||||||||| | || | ||||||||    
T  17898230 actttatctctctattgctttgatttccgtgcaactaactactatttctttgtaaattatggttatccgataagttgtcaaccaaattggtggttcaaat 17898131  T
Q  130 aacactcct 138  Q
    |||||||||    
T  17898130 aacactcct 17898122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 36802942 - 36803078
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg-ccct 99  Q
    |||||||||||||||||||||||       ||||||| ||||||||||||||||||| |||||| | ||||   |||||||  ||||||| |||| |||     
T  36802942 ctttctctctcatactcacattatttttt-actttatctctctattactttgatttttgtgcaaatacctattctttctttacaaattatggttgtcccc 36803040  T
Q  100 ataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    |||| |||||||  | | |||||||||||||||||||||    
T  36803041 ataagttgtcaatta-aagattgttcaaataacactcct 36803078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 4023338 - 4023239
Alignment:
Q  39 tctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    |||||||| ||||| |||||||| ||   | ||| |||||||||||||||||  ||| |  ||||||||||||||| ||| ||||| |||||||||||||    
T  4023338 tctctattgctttggttttcgtgtaaagacttacattttctttgtaaattatgattgtctcataaattgtcaaccaaatggttgttgaaataacactcct 4023239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 29712053 - 29712159
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||| ||||  ||||| | ||||| ||||||||||||||||| |||| | | ||| || ||||||| ||| |||||||||||    
T  29712053 actttatctctctattgctttggtttttatgcaaatacctactttttctttgtaaattatggttgtcatgtaagtt-tcaaccaaatggttgttcaaata 29712151  T
Q  131 acactcct 138  Q
    ||| ||||    
T  29712152 acagtcct 29712159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 39213766 - 39213659
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||  ||||||||||| | || || |||||||||||||| || |||| || | || ||||||| || ||| ||||| |||||    
T  39213766 actttatctctctattcctttagttttcgtgcaaataccaactttttctttgtaaatgatggttgtcccaaaagttgtcaatcaaatggttgtttaaata 39213667  T
Q  131 acactcct 138  Q
    ||||||||    
T  39213666 acactcct 39213659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 40700241 - 40700301
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtg 61  Q
    |||||||||||||||||||||||       ||||||| |||||||||||||||||||||||    
T  40700241 ctttctctctcatactcacattatatttttactttatctctctattactttgattttcgtg 40700301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 9377531 - 9377633
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||| ||||||||||| |  |||| |||||||||||||||||   || |  |||| |||||||| | ||| |||||||||||    
T  9377531 actttatctctctattgctttggttttcgtgcaaatatctactttttctttgtaaattatgactgtctcataagttgtcaactaaatggttgttcaaata 9377630  T
Q  131 aca 133  Q
    |||    
T  9377631 aca 9377633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 35589411 - 35589276
Alignment:
Q  2 tttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctat 101  Q
    ||||||||||||||||||||||       ||||||| ||||||||  |||| ||||||||||| |  | || ||||||||||||||||| |||| || |     
T  35589411 tttctctctcatactcacattacttttt-actttatctctctattgttttggttttcgtgcaaatatcaactttttctttgtaaattatggttgtcccaa 35589313  T
Q  102 aaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||| ||||| | ||  ||||| |||||||||||||    
T  35589312 aaattatcaactaaatagttgtttaaataacactcct 35589276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 1415991 - 1415930
Alignment:
Q  74 ttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacact 135  Q
    |||||||| |||||||| |||| |||||||||| ||||| | || |||||||||||||||||    
T  1415991 ttttctttataaattatggttgtcctataaattatcaactaaataattgttcaaataacact 1415930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 37105713 - 37105822
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| | |||||| ||||  ||||||||||  | || || ||||||||||||||||| |||| |  | || |||||||||| ||  |||||||||||    
T  37105713 actttatctttctattgctttcgttttcgtgcacataccaactttttctttgtaaattatggttgtcacaaaagttgtcaaccaaatagttgttcaaata 37105812  T
Q  131 acactccttt 140  Q
    ||||||||||    
T  37105813 acactccttt 37105822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 4139300 - 4139244
Alignment:
Q  34 ttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattat 90  Q
    |||| |||||||||||||| |||||||||| ||  |||| |||||||||||||||||    
T  4139300 ttatctctctattactttggttttcgtgcatgtagctacattttctttgtaaattat 4139244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 29449257 - 29449341
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaa 86  Q
    |||||||||||||||||||||||       ||||| | ||||||||||||||||||| |||||| | | || ||||||||||||||    
T  29449257 ctttctctctcatactcacattatatttttactttctctctctattactttgatttttgtgcaaatgcata-cttttctttgtaaa 29449341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 42532764 - 42532703
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgc 62  Q
    |||||| ||||||||||||||||       ||||||| ||||||||||||||||||||||||    
T  42532764 ctttctttctcatactcacattatatttttactttatctctctattactttgattttcgtgc 42532703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 28244236 - 28244135
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg-ccctataaattgtcaaccatatgattgttcaaat 129  Q
    ||||||| |||||||| ||||||||||||||||| | ||||  ||||||||| |||||||| ||| ||| |||| |||||||| | | | ||||||||||    
T  28244236 actttatctctctattgctttgattttcgtgcaa-tacctattttttctttgcaaattataattgtccccataagttgtcaacta-aaggttgttcaaat 28244139  T
Q  130 aaca 133  Q
    ||||    
T  28244138 aaca 28244135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 44254714 - 44254780
Alignment:
Q  69 ctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacact 135  Q
    |||| ||||||||||||||||| |||  || |||| ||||||| || ||| ||||||||||||||||    
T  44254714 ctactttttctttgtaaattatggttatcccataagttgtcaatcaaatggttgttcaaataacact 44254780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 11091337 - 11091252
Alignment:
Q  49 tttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacac 134  Q
    |||||||||| || || | ||||| ||||| ||||||||||| |||| |  ||||||| ||||||| ||  |||||||||||||||    
T  11091337 tttgattttcttgtaaatacctactttttccttgtaaattatggttgtctcataaattatcaaccaaattgttgttcaaataacac 11091252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 14233671 - 14233610
Alignment:
Q  74 ttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacact 135  Q
    ||||||||||||||||| |||| | | ||| |||||||| | ||| ||||||||||||||||    
T  14233671 ttttctttgtaaattatggttgtcttgtaagttgtcaacaaaatggttgttcaaataacact 14233610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 6895969 - 6896033
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg 95  Q
    ||||||||||||||||  ||||||||  |||||| | | ||| ||||||||||||||||| ||||    
T  6895969 actttatttctctattgttttgatttctgtgcaaatacttactttttctttgtaaattatggttg 6896033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 44711985 - 44711925
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattata 91  Q
    ||||||| |||||||| ||||||||||||||||| | ||||   ||||||| |||||||||    
T  44711985 actttatctctctattgctttgattttcgtgcaaatacctattctttctttataaattata 44711925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 7817683 - 7817818
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||||||||||||||| |  | || ||||||||||||||||| |||| |  |    
T  7817683 ctttctctctcatactcacattattttt--actttatctctctattgctttgattttcgtgcaaatatccactttttctttgtaaattatggttgtcaca 7817780  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||| |||||||||| ||| |||||||||||||||||||    
T  7817781 taagttgtcaaccaaatggttgttcaaataacactcct 7817818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 41458642 - 41458778
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||||||| ||||  ||||||||| |||||| | ||||| |||||||| |||||||| |||| | |     
T  41458642 ctttctctctcatactcacattatttttt-actttatttctatattgttttgatttttgtgcaaatacctactttttctttataaattatggttgtcatg 41458740  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||| |||||||||| ||| |||||||||||||||||||    
T  41458741 taagttgtcaaccaaatggttgttcaaataacactcct 41458778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 10055628 - 10055519
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||| |||| || ||| | || || |||||||||||||||||||||| || |||| |||||||||| ||| ||||| |||||    
T  10055628 actttatctctctattgctttggtttttgtacaaataccaactttttctttgtaaattatagttgtcccataagttgtcaaccaaatggttgtttaaata 10055529  T
Q  131 acactccttt 140  Q
    ||||||||||    
T  10055528 acactccttt 10055519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 28036819 - 28036926
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||| ||||||||||| | || || ||||||||||||||||| |||| || | || |||||||||| ||| |||||||| ||    
T  28036819 actttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaatta 28036918  T
Q  131 acactcct 138  Q
    ||||||||    
T  28036919 acactcct 28036926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 43573539 - 43573432
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||| ||||||||||| | || |  |||||||| |||||||| |||| |  | ||||||||||||| |||||||||||||||    
T  43573539 actttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatggttgtctcaaaaattgtcaaccaaatgattgttcaaata 43573440  T
Q  131 acactcct 138  Q
    ||||||||    
T  43573439 acactcct 43573432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 44184584 - 44184455
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| | ||||  ||||||||||||||||| ||||  | |    
T  44184584 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgcaaatacctattttttctttgtaaattatggttgttcca 44184486  T
Q  101 taaattgtcaaccatatgattgttcaaataa 131  Q
     || |||||||||| ||| ||||||||||||    
T  44184485 aaagttgtcaaccaaatggttgttcaaataa 44184455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 11352999 - 11352863
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| ||| |||| ||||| |||||||| || | || |  ||||||||||||||||| |||| || |    
T  11352999 ctttctctctcatactcacattacttttt-actttatctctttattgctttggttttcgtgtaaataccaaatttttctttgtaaattatggttgtccca 11352901  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| ||| |||||||||||||||||||    
T  11352900 aaagttgtcaaccaaatggttgttcaaataacactcct 11352863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 3343326 - 3343221
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||| ||||||||||| |||| || |||||||| |||||||| |||| | || || ||||||| || ||  |||||||||||    
T  3343326 actttatctctctattgctttggttttcgtgcaaatcccaactttttctttataaattatggttgtcttaaaagttgtcaatcaaatagttgttcaaata 3343227  T
Q  131 acactc 136  Q
    ||||||    
T  3343226 acactc 3343221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 35588887 - 35588778
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||||||||| | || || |||||||||||||||||| ||| |  | ||||| ||||  | ||| |||||||||||    
T  35588887 actttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattataattgtctcaaaaattatcaattaaatggttgttcaaata 35588788  T
Q  131 acactccttt 140  Q
    ||||| ||||    
T  35588787 acacttcttt 35588778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 3062405 - 3062509
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||||||  |||| |||| |||||| | ||||  ||||||||||||||||| |||| | | ||| |||||||||| ||| |||||||||||    
T  3062405 actttatctctctattgttttggtttttgtgcaaatacctattttttctttgtaaattatggttgtcatgtaagttgtcaaccaaatggttgttcaaata 3062504  T
Q  131 acact 135  Q
    |||||    
T  3062505 acact 3062509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 21822595 - 21822491
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||||||||||||||||||||| || | || |  ||||||||||||||||| ||||   || || |||||||| | ||| |||||||||||    
T  21822595 actttatctctctattactttgattttcgtgtaaataccaattttttctttgtaaattatggttgttttaaaagttgtcaactaaatggttgttcaaata 21822496  T
Q  131 acact 135  Q
    |||||    
T  21822495 acact 21822491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 11564939 - 11565072
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg-ccct 99  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||||||||||||||| | ||||  ||||||||| ||||||| |||| |||     
T  11564939 ctttctctctcatactcacattatttttt-actttatctctctattgctttgattttcgtgcaa-tacctattttttctttgcaaattatggttgtcccc 11565036  T
Q  100 ataaattgtcaaccatatgattgttcaaataacactc 136  Q
    |||| |||||||| | | | |||||||||||||||||    
T  11565037 ataagttgtcaacta-aaggttgttcaaataacactc 11565072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 35452598 - 35452464
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    ||||||||||||||||||||| |       ||||||| |||||||| ||||||||| ||||||| | ||| | |||||||| |||||||| |||| |  |    
T  35452598 ctttctctctcatactcacat-aattttttactttatctctctattgctttgatttccgtgcaaataccttctttttctttataaattatggttgtcaca 35452500  T
Q  101 taaattgtcaaccatat-gattgttcaaataacact 135  Q
     || |||||||||| || ||||||||||||||||||    
T  35452499 caagttgtcaaccagattgattgttcaaataacact 35452464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 3293204 - 3293268
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg 95  Q
    ||||||| |||||||| ||||||||||| ||||| | ||||| |||||||| |||||||||||||    
T  3293204 actttatctctctattgctttgattttcatgcaaatacctactttttctttataaattatagttg 3293268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 18111636 - 18111551
Alignment:
Q  2 tttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaat 87  Q
    ||||||||||||||||||||||       ||||||| |||||||||||||||||||| ||| | | ||||  ||||||||||||||    
T  18111636 tttctctctcatactcacattatatttttactttatctctctattactttgattttcttgccaatgcctattttttctttgtaaat 18111551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 12645906 - 12645799
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||||||||| |  | || ||||||||||||||||| |||  |  | || |||||||||| ||  |||||||||||    
T  12645906 actttatctctctattgctttgattttcgtgcaaatatcaactttttctttgtaaattatggttatctcaaaagttgtcaaccaaatagttgttcaaata 12645807  T
Q  131 acactcct 138  Q
     |||||||    
T  12645806 tcactcct 12645799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 13729801 - 13729908
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| | ||| ||||||||||| | || |  ||||||||||||||||| |||| || | || |||||||||| ||| ||| | |||||    
T  13729801 actttatctctctattgcgttggttttcgtgcaaataccaattttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgctgaaata 13729900  T
Q  131 acactcct 138  Q
    ||||||||    
T  13729901 acactcct 13729908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 25067341 - 25067402
Alignment:
Q  74 ttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacact 135  Q
    ||||||||||||||||| |||  | |||||||||||||||| ||| ||||| ||||||||||    
T  25067341 ttttctttgtaaattatggttatcatataaattgtcaaccaaatggttgtttaaataacact 25067402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 42555639 - 42555744
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| | ||| ||||||| ||| | ||||| ||| |||| |||||||| |||| |  | || |||||||||| ||| |||||||||||    
T  42555639 actttatctctctattgcattggttttcgtacaaatgcctacttttcctttataaattatggttgtctcaaaagttgtcaaccaaatggttgttcaaata 42555738  T
Q  131 acactc 136  Q
    ||||||    
T  42555739 acactc 42555744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 41893990 - 41894097
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||| ||  |||| ||||||||||  | || || ||| ||||||||||||| |||| |  | ||||||||||| | ||| |||||||||||    
T  41893990 actttatctctctgttgttttggttttcgtgcatataccaacttttcctttgtaaattatggttgtcacaaaaattgtcaactaaatggttgttcaaata 41894089  T
Q  131 acactcct 138  Q
    ||||||||    
T  41894090 acactcct 41894097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 21559873 - 21559978
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccct-ataaattgtcaaccatatgattgttcaaat 129  Q
    ||||||| |||||||| ||||||||||||||||| | ||||   |||||||  |||||||||||| ||| |||| |||||||  | | || |||||||||    
T  21559873 actttatctctctattgctttgattttcgtgcaaatacctattatttctttacaaattatagttgtcctcataagttgtcaattaaagga-tgttcaaat 21559971  T
Q  130 aacactc 136  Q
    |||||||    
T  21559972 aacactc 21559978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 42926214 - 42926320
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccata-tgattgttcaaat 129  Q
    ||||||| ||||||||  ||||||||  || ||| | | ||| ||||||||||||||||| |||| |  ||||||||||||||| | || ||||| ||||    
T  42926214 actttatctctctattgttttgatttctgtacaaatacttactttttctttgtaaattatggttgtcacataaattgtcaaccaaattggttgttaaaat 42926313  T
Q  130 aacactc 136  Q
    |||||||    
T  42926314 aacactc 42926320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 46829525 - 46829611
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaatt 88  Q
    ||||||||||||||||||||| |       ||||||| |||||||| ||||||||||||||| |   ||||| |||||||||||||||    
T  46829525 ctttctctctcatactcacat-atgtttttactttatctctctattgctttgattttcgtgccaaaacctactttttctttgtaaatt 46829611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 21023070 - 21023006
Alignment:
Q  74 ttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||||||||||| ||| |||| |  ||||||||||| | |  ||||||||||||||||||||||    
T  21023070 ttttctttgtaaaatatggttgtcaaataaattgtcatcaaattgattgttcaaataacactcct 21023006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 31844601 - 31844537
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg 95  Q
    ||||||| ||||||||  |||| |||| || ||| | ||||| ||||||||||||||||||||||    
T  31844601 actttatctctctattgttttggtttttgtacaaatacctactttttctttgtaaattatagttg 31844537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 43482598 - 43482662
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg 95  Q
    ||||||| ||||||||  |||| ||||||||||| | ||||| ||||||||| ||||||| ||||    
T  43482598 actttatctctctattgttttggttttcgtgcaaatacctactttttctttgaaaattatggttg 43482662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 47495045 - 47495153
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatat-gattgttcaaat 129  Q
    ||||||| ||||||||  ||| ||||  |||||| | |||| ||||| ||||||||||||| ||  | ||||| |||| ||| | || ||||||||||||    
T  47495045 actttatctctctattgttttaatttctgtgcaaatacctatcttttatttgtaaattataattatcatataagttgtgaactaaattgattgttcaaat 47495144  T
Q  130 aacactcct 138  Q
    |||||||||    
T  47495145 aacactcct 47495153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 13143407 - 13143271
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||||||||||||||| | |  || ||||||||||||||||| |||| || |    
T  13143407 ctttctctctcatactcacattacttttt-actttatctctctattgctttgattttcgtgcaaatacaaactttttctttgtaaattatggttgtccca 13143309  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| ||| |||||||||||||||||||    
T  13143308 aaagttgtcaaccaaatggttgttcaaataacactcct 13143271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 1369435 - 1369540
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||||||||||||||| | || || ||||||||||||||||| |||| |  | ||||||||||||| ||| |||||||||||    
T  1369435 actttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtctcaaaaattgtcaaccaaatggttgttcaaata 1369534  T
Q  131 acactc 136  Q
    ||||||    
T  1369535 acactc 1369540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 32459542 - 32459405
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||| ||||||||       ||||||| |||||||| ||||| ||||||||||| | || || ||||||||||||||||| |||| ||||    
T  32459542 ctttctctctcatattcacattacttttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtccta 32459443  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || ||||||| || ||  |||||||||||||||||||    
T  32459442 aaagttgtcaatcaaattgttgttcaaataacactcct 32459405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 754434 - 754327
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||| ||||||||||| | || || ||||||||||||||||| ||||  | | ||||||||||||| ||| |||||||||||    
T  754434 actttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgttccaaaaattgtcaaccaaatggttgttcaaata 754335  T
Q  131 acactcct 138  Q
    ||||||||    
T  754334 acactcct 754327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 35213586 - 35213450
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| | || || |||||||||||||||||  ||| || |    
T  35213586 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatgattgtccca 35213488  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| ||| |||||||||||||||||||    
T  35213487 aaagttgtcaaccaaatggttgttcaaataacactcct 35213450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 6531208 - 6531069
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctatta---ctttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcc 97  Q
    |||||||||||||||||||||||       ||||||| |||||||||   ||||||||||||||||| | | ||| ||||||||||||||||| |||| |    
T  6531208 ctttctctctcatactcacattatttttt-actttatctctctattattgctttgattttcgtgcaaatacatactttttctttgtaaattatggttgtc 6531110  T
Q  98 ctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    | || | || ||||||| ||| |||||||||||||||||||    
T  6531109 ccattagttatcaaccaaatggttgttcaaataacactcct 6531069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 18141326 - 18141190
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||||||||||||||  | || || | ||||||||||||||| |||| |  |    
T  18141326 ctttctctctcatactcacattacttttt-actttatctctctattgctttgattttcgtgcacataccaacttattctttgtaaattatggttgtcaca 18141228  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
     || |||||||||| ||| |||||||||||||||||||    
T  18141227 aaagttgtcaaccaaatggttgttcaaataacactcct 18141190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 9050208 - 9050313
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccata-tgattgttcaaat 129  Q
    ||||||| | ||||||| |||||||||||||||| | |||||  ||||||||||||||||   || |||||||||||||||| | | ||||| |||||||    
T  9050208 actttatctttctattattttgattttcgtgcaactacctactatttctttgtaaattatgactgtcctataaattgtcaactaaattgattattcaaat 9050307  T
Q  130 aacact 135  Q
    ||||||    
T  9050308 aacact 9050313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 2943509 - 2943609
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||||||||||||| |||| ||||||||||| |  |||| |||||||| |||| ||| ||||   |||||||||| ||||| ||| |||||||||||    
T  2943509 actttatttctctattattttggttttcgtgcaaatatctactttttctttataaaatatggttgttttataaattgttaaccaaatggttgttcaaata 2943608  T
Q  131 a 131  Q
    |    
T  2943609 a 2943609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 20822893 - 20822761
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| |||||||| ||||| ||||||||||| | || |  |||| ||| |||||||| |||| ||||    
T  20822893 ctttctctctcatactcacattacttttt-actttatctctctattgctttggttttcgtgcaaataccaatatttt-tttataaattatggttgtccta 20822796  T
Q  101 taaattgtcaaccatatgattgttcaaataacact 135  Q
     || |||||||||| ||| ||||||||||||||||    
T  20822795 aaagttgtcaaccaaatggttgttcaaataacact 20822761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 33421835 - 33421941
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg-ccctataaattgtcaaccatatgattgttcaaat 129  Q
    ||||||| |||||||| ||||||||||||||||| | ||||  ||||||||| ||||| |||||| |||||||| |||||||  | | | ||||||||||    
T  33421835 actttatctctctattgctttgattttcgtgcaa-tacctattttttctttgcaaattttagttgtccctataagttgtcaatta-aaggttgttcaaat 33421932  T
Q  130 aacactcct 138  Q
    |||||||||    
T  33421933 aacactcct 33421941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 3832582 - 3832645
Alignment:
Q  75 tttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    |||||||||||||||| |||| || |||| ||||||| || ||| |||||||||||||||||||    
T  3832582 tttctttgtaaattatggttgtcccataagttgtcaatcaaatggttgttcaaataacactcct 3832645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 5028262 - 5028160
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||| |||| ||||| |||||||| || |  |||| |||||||| |||||||| |||| |  |||| || ||||||| |||||||||||||||    
T  5028262 actttatctctttattgctttggttttcgtgtaaatatctactttttctttataaattatggttgtctcataagttatcaaccaaatgattgttcaaata 5028163  T
Q  131 aca 133  Q
    |||    
T  5028162 aca 5028160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 32046816 - 32046877
Alignment:
Q  74 ttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacact 135  Q
    |||||||| |||||||| |||| || |||| |||||||||| ||| ||||||||||||||||    
T  32046816 ttttctttataaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacact 32046877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 2689089 - 2688953
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| ||||||||  |||| |||  |||||| | ||||| |||||||| |||||||| |||| |  |    
T  2689089 ctttctctctcatactcacattattttt--actttatctctctattgttttggtttatgtgcaaatacctactttttctttataaattatggttgtcaca 2688992  T
Q  101 taaattgtcaaccatat-gattgttcaaataacactcct 138  Q
     || |||||||||| || |||||||||||||||| ||||    
T  2688991 aaagttgtcaaccaaattgattgttcaaataacattcct 2688953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 14699660 - 14699596
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg 95  Q
    ||||||| ||||| || ||||| ||||||||||| | ||||| ||||||||||||||||| ||||    
T  14699660 actttatctctctgttgctttggttttcgtgcaaatacctactttttctttgtaaattattgttg 14699596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 868948 - 868841
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||||||  |||| |||| || ||| | | ||| ||||||||||||||||| |||  | | |||  ||||||||| ||| |||||||||||    
T  868948 actttatctctctattgatttggtttttgtacaaatacttactttttctttgtaaattatggttatcatgtaaggtgtcaaccaaatggttgttcaaata 868849  T
Q  131 acactcct 138  Q
    ||||||||    
T  868848 acactcct 868841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 31749440 - 31749543
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||||||  ||| ||||||||| || |  |||  ||||||||||||||||| |||| |   ||| ||||||| || |||||||||||||||    
T  31749440 actttatctctctattgttttaattttcgtgtaaatatctattttttctttgtaaattatggttgtctcttaagttgtcaatcaaatgattgttcaaata 31749539  T
Q  131 acac 134  Q
    ||||    
T  31749540 acac 31749543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 11547482 - 11547418
Alignment:
Q  74 ttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||||||||||||||||| | || |  ||||||||||| | |  ||||||||||||||||||||||    
T  11547482 ttttctttgtaaattatggctgtcaaataaattgtcaccaaattgattgttcaaataacactcct 11547418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 14693248 - 14693188
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattata 91  Q
    ||||||| ||||| || ||||| ||| ||||||| | ||||| ||||||||||||||||||    
T  14693248 actttatctctctgttgctttggtttccgtgcaaatacctactttttctttgtaaattata 14693188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 26832721 - 26832821
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||||||  |||| ||||||||||| | | ||  ||||||| ||||||||| |||| |  |||| ||||||| || ||| |||||||||||    
T  26832721 actttatctctctattgttttggttttcgtgcaaatacatagtttttcttcgtaaattatggttgtcacataagttgtcaatcaaatggttgttcaaata 26832820  T
Q  131 a 131  Q
    |    
T  26832821 a 26832821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 28041810 - 28041702
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccata-tgattgttcaaat 129  Q
    ||||||| |||||||| |||||  || ||||||||| | ||| |||||||||||||| || ||||     ||| |||||||||| | |||||||| ||||    
T  28041810 actttatctctctattgctttggcttccgtgcaagtacttactttttctttgtaaatgatggttgttaagtaagttgtcaaccaaattgattgttaaaat 28041711  T
Q  130 aacactcct 138  Q
    |||||||||    
T  28041710 aacactcct 28041702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 11010 - 11146
Alignment:
Q  1 ctttctctctcatactcacattannnnnnnactttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgcccta 100  Q
    |||||||||||||||||||||||       ||||||| ||||||||  |||||||||||||||| | || || |||||||||||||||||  ||| |  |    
T  11010 ctttctctctcatactcacattatttttt-actttatctctctattgttttgattttcgtgcaaatacccactttttctttgtaaattatgattgtcaca 11108  T
Q  101 taaattgtcaaccatatgattgttcaaataacactcct 138  Q
    ||| |||||||||| | | |||||||||||||||||||    
T  11109 taagttgtcaaccaaaaggttgttcaaataacactcct 11146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 38500 - 38607
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| |||||||| ||||| ||||||||| | | || || |||||||||||||||||||||| || | || |||||||| | ||| |||||||||||    
T  38500 actttatctctctattgctttggttttcgtgcgaataccaactttttctttgtaaattatagttgtcccaaaagttgtcaactaaatggttgttcaaata 38599  T
Q  131 acactcct 138  Q
    ||||||||    
T  38600 acactcct 38607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 12007 - 12114
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttgccctataaattgtcaaccatatgattgttcaaata 130  Q
    ||||||| ||||||||  |||| ||||||||||  | || || ||||||||||||||||| |||| |  | || |||||||||| ||  |||||||||||    
T  12007 actttatctctctattgttttggttttcgtgcacataccaactttttctttgtaaattatggttgtcgcaaaagttgtcaaccaaatagttgttcaaata 12106  T
Q  131 acactcct 138  Q
    ||||||||    
T  12107 acactcct 12114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 41830 - 41894
Alignment:
Q  31 actttatttctctattactttgattttcgtgcaagtccctaccttttctttgtaaattatagttg 95  Q
    |||||||||||||||| ||||||||||||||||| |  || |||||||||| ||| |||| ||||    
T  41830 actttatttctctattgctttgattttcgtgcaaatatcttccttttctttataatttatggttg 41894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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