View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19032_low_3 (Length: 708)
Name: NF19032_low_3
Description: NF19032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19032_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 592; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 1 - 695
Target Start/End: Complemental strand, 37195822 - 37195128
Alignment:
| Q |
1 |
tgtttgttattgtgtctgtgttgtaactaacaatatcttctggttttgtaacaaggtttgattgcatgatgtttgaaacatatgtgagatttgtatcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195822 |
tgtttgttattgtgtctgtgttgtaactaacaatatcttctggttttgtaacaaggtttgattgcatgatgtttgaaacatatgtgagatttgtatcatc |
37195723 |
T |
|
| Q |
101 |
ttgtagataataggaagctaaagctatgtcacaagttttgctacattttgattctgctatgaaggatttagaggctagtaacatgaataaaaatgataat |
200 |
Q |
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| T |
37195722 |
ttgtagataataggaagctaacgctatattacaagttttgctacattttgattctgctatgaaggatttagaggctagtaacatgaataaaaatgataat |
37195623 |
T |
|
| Q |
201 |
ctgaatttgattggtttcattgtgtacagtataataggaacataggataagaatttgggtgtgtgatgaatcatagtgtgctaggaataatacatgttat |
300 |
Q |
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| T |
37195622 |
ctgaatttgattggtttcattgtgtacagtataataggaacataggataagaatttgggtgtgtgatgaatcatagtgtgctaggaataatacatgttat |
37195523 |
T |
|
| Q |
301 |
ggaaaatggaaatatggttgagttgnnnnnnnttattttcatattaaagactttggaaaaatatataattttcagagaagaggttgatggtaaaactaat |
400 |
Q |
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| T |
37195522 |
ggaaaatggaaatatggttgagttgaaaaaaattattttcatattaaagactttggaaaaatatataattttcagagaagaggttgatggtaaaactaat |
37195423 |
T |
|
| Q |
401 |
tttttataaagttgagaataaaatctcatgtgttagannnnnnnnnnnnnnnnnnnnnncacttctgtcactttctctgcacttgactatcataaaagat |
500 |
Q |
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| T |
37195422 |
tttttataaagttgagaataaaatctcatgtgttagatttattttttttgttttattttcacttctgtcactttctctgcacttgactatcataaaagat |
37195323 |
T |
|
| Q |
501 |
tcttaggaatattatatacaatctaactaaatatatattttaaaataacttggaataatattcccataaactaatgtttcttatgaattgtttgtataaa |
600 |
Q |
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| T |
37195322 |
tcttaggaatattatatacaatctaactaaatatatattttaaaataacttggaataatattcccataaactaatgtttcttatgaattgtttgtataaa |
37195223 |
T |
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| Q |
601 |
atcaaataaactccgattaatttagatgggaaaaaagcattaattaatctggtagttaaggtggttaaggggagaatttttcaaatggatttatt |
695 |
Q |
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| T |
37195222 |
atcaaataaactccgattaatttagatggaaaaaaagcattaattaatctggtagttaaggtggttaaggggagaatttttcaaatggatttatt |
37195128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 37226665 - 37226543
Alignment:
| Q |
107 |
ataataggaagctaaagctatgtcacaagttttgctacattttgattctgctatgaaggatttagaggctagtaacatgaataaaaatgataatctgaat |
206 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| ||||| ||| | ||||||| |||||||| ||||||||||||| |
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| T |
37226665 |
ataataggaagctaaagctaagtcacaagttttgttacattttgattctgaagtgatggattgcgagacaagtaacaagaataaaagtgataatctgaat |
37226566 |
T |
|
| Q |
207 |
t---tgattggtttcattgtgta |
226 |
Q |
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| T |
37226565 |
ttgatgattggtttcattgtgta |
37226543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 37221195 - 37221094
Alignment:
| Q |
107 |
ataataggaagctaaagctatgtcacaagttttgctacattttgattctgctatgaaggatttagaggctagtaacatgaataaaaatgataatctgaat |
206 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| || | ||||||| |||||||| ||||||||||||| |
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| T |
37221195 |
ataataggaagctaaagctaagtcacaagttttgctacattttgattctgaagtgatggattgcaagacaagtaacaagaataaaagtgataatctgaat |
37221096 |
T |
|
| Q |
207 |
tt |
208 |
Q |
| |
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|| |
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|
| T |
37221095 |
tt |
37221094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 37387204 - 37387319
Alignment:
| Q |
42 |
ggttttgtaacaaggtttgattgcatgatgtttgaaacatatgtgagatttgtatcatcttgtagataataggaagctaaagctatgtcacaagttttgc |
141 |
Q |
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||||||| ||||| || ||||||||||||||||||| |||||| | |||||| | || || ||||||||| |||||||||| |||||||||||||| |
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| T |
37387204 |
ggttttgaaacaacattggattgcatgatgtttgaaatatatgtcaagtttgtaccttcccatatataataggatgctaaagctaagtcacaagttttgc |
37387303 |
T |
|
| Q |
142 |
tacattttgattctgc |
157 |
Q |
| |
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|||||||||||||||| |
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| T |
37387304 |
tacattttgattctgc |
37387319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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