View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19032_low_31 (Length: 217)
Name: NF19032_low_31
Description: NF19032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19032_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 10573283 - 10573488
Alignment:
| Q |
5 |
ctttaattgctttggatttttctttcaagacaaaaccacctcatccctcaacattaatattgcactcactctctcacaaacaaacttatgataactaaca |
104 |
Q |
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| T |
10573283 |
ctttaattgccttggatttttctttcaagacaaaaccacctcatccctcaacattaatattgcattcactctctcacaaacaaacttatgataactaaca |
10573382 |
T |
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| Q |
105 |
aattatgccccacattttaacattctaaacagttatggtccccaataactagttgatctcattctcatagaaaaataagacaatgttcaagaaattaggc |
204 |
Q |
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| T |
10573383 |
aattatgtcccacattttaacattctaaacagttatggtccccaataacttgttgatctcattctcatagaaaaataagacaatgttcaagaaattaggc |
10573482 |
T |
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| Q |
205 |
aaagag |
210 |
Q |
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| T |
10573483 |
aaagag |
10573488 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 42456315 - 42456277
Alignment:
| Q |
15 |
tttggatttttctttcaagacaaaaccacctcatccctc |
53 |
Q |
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|||| ||||||||||||| |||||||||||||||||||| |
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| T |
42456315 |
tttgaatttttctttcaacacaaaaccacctcatccctc |
42456277 |
T |
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