View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19032_low_5 (Length: 678)
Name: NF19032_low_5
Description: NF19032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19032_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 366 - 668
Target Start/End: Complemental strand, 35342969 - 35342671
Alignment:
| Q |
366 |
tttatttgttttacaagccttataaggttatttatcttttctcctatgtgtactcaaccagtgaaagtttgttcataactgcttattttgctttttccta |
465 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35342969 |
tttatttgttttacaagtctaataaggttatttatcttttctcctatgtatactca----gtgaaagttggttcataactgcttattttgctttttccta |
35342874 |
T |
|
| Q |
466 |
attgcaatctatgagaattgcataatcaaccataagcataacatttgattgtacatgtactaaaaaagatggtttacactatattaaatgtgtagataaa |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35342873 |
attgcaatctatgagaattgcataatcaaccataagcataacatttgattgtacatgtactaaaaaagatggtttacactatattaaatgtgtagataaa |
35342774 |
T |
|
| Q |
566 |
taatagtatgcaattttttcttataaaattgtttagatagtggaggcattctttcatgtaagacatgagagaactggtttttaaaatttgaattcaagta |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35342773 |
taatagtatgcaattttttcttataaaattgtttagatagtggaggcattctttcatgtaagacatgagagaactggtttttaaaatttgaattcaagta |
35342674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 35343322 - 35343012
Alignment:
| Q |
20 |
gaccccgctacaaaacccttgtggacatgatcataaaaaagggcttcttcattggattcacaagcatagtcctacacatca------tagtagtggtttt |
113 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35343322 |
gaccccgctacaaaatccttgtggacttgatcataaaaaagggcttcttcattggattcacaagcatagtcctacacatcaacatcatagtagtggtttt |
35343223 |
T |
|
| Q |
114 |
gtggctaaaccaaaatttacatgtatattctgagtctcctgacttgtgtagtacactagatccaatactgtaattaatattgaatggttaatttgaatac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
35343222 |
gtggctaaaccaaaatttacatgtatattctgagtgttctgacttgtgtagtacactagatccaatattgtaattaatattgaatggttaa-ttgaatac |
35343124 |
T |
|
| Q |
214 |
caacccaatgcagaaataggttgttacagtttcagtcttagttctctttataacattcatttgagagtaacattgatatataggctttgtacattgaggc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35343123 |
caacccaatgcagaaataggttgttacagtttcagtcttagt--------taacattcatttgagagtaacattgatatataggctttgtacattgaggc |
35343032 |
T |
|
| Q |
314 |
gaaaagcatactttattttc |
333 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
35343031 |
gaaaagcatactttagtttc |
35343012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 35356592 - 35356917
Alignment:
| Q |
20 |
gaccccgctacaaaacccttgtggacatgatcataaaaaagggcttcttcattggattcacaagcatagtcctacacatcatagtagtggttttgtggct |
119 |
Q |
| |
|
||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| ||| | |
|
|
| T |
35356592 |
gaccctgctacaaaacccttgtggccaagatcataaaaaagggcttcttcattggattcaaaagcttagtcctgcacatcatagtagtggtcccgtgccc |
35356691 |
T |
|
| Q |
120 |
aaaccaaaatttacatgtatattctgagtctcctgacttgtgtagtacactagatccaatactgtaattaatattgaatggttaatttgaataccaaccc |
219 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||| ||||||||||||| ||| | ||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
35356692 |
aaaccaaaatttacatgaatcttctgagtgtcctgacttttgtagtacactaggtcc---attgtaattaatattgaatgg----tttaaataccaaccc |
35356784 |
T |
|
| Q |
220 |
aatgcagaaataggttgttacagtttcagtct-tagttctctttataacattcatttgagagtaacattgatatataggctttgtacattgaggcgaaaa |
318 |
Q |
| |
|
|||||||| ||||||||| || |||||||| |||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
35356785 |
tctgcagaaaaaggttgttataggttcagtctatagttctctttataacattcatatgagagtaaaattgatatgtaggccttgtacattgaggtgaaaa |
35356884 |
T |
|
| Q |
319 |
gcatactttattttctcggttatgcagataactt |
352 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||| |
|
|
| T |
35356885 |
-cataatttattttctcggtcatgcaaataactt |
35356917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 35362634 - 35362836
Alignment:
| Q |
20 |
gaccccgctacaaaacccttgtggacatgatcataaaaaagggcttcttcattggattcacaagcatagtcctacacat------catagtagtggtttt |
113 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35362634 |
gaccccgctacaaaatccttgtggacttgatcataaaaaagggcttcttcattggattcacaagcatagtcctacacatcaacatcatagtagtggtttt |
35362733 |
T |
|
| Q |
114 |
gtggctaaaccaaaatttacatgtatattctgagtctcctgacttgtgtagtacactagatccaatactgtaattaatattgaatggttaatttgaatac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35362734 |
gtggctaaaccaaaatttacatgtatattctgagtgtcctgacttgtgtaatacactagatccaatattgtaattaatattgaatggttaatttgaatac |
35362833 |
T |
|
| Q |
214 |
caa |
216 |
Q |
| |
|
||| |
|
|
| T |
35362834 |
caa |
35362836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 416 - 509
Target Start/End: Original strand, 35357091 - 35357182
Alignment:
| Q |
416 |
tactcaaccagtgaaagtttgttcataactgcttattttgctttttcctaattgcaatctatgagaattgcataatcaaccataagcataacat |
509 |
Q |
| |
|
||||||||| |||| |||| |||||||||||||||||||||| ||| || | ||||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
35357091 |
tactcaacccgtgacagttagttcataactgcttattttgctcttt--tagtagcaatctatcagaatggcataatcaacaataagcataacat |
35357182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University