View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19033_high_17 (Length: 238)
Name: NF19033_high_17
Description: NF19033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19033_high_17 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 16926700 - 16926563
Alignment:
| Q |
101 |
actactgcatgattatcaccatataatgttagcagtggtgtttgaatgaagatgtcgaaatataattttctagctaaagagactggccatacaatgcatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16926700 |
actactgcatgattatcaccatataatgttagcagtggtgtctgaatgaagatgtcaaaatatatttttctagctaaagagactggccatacaatgcatg |
16926601 |
T |
|
| Q |
201 |
aacttaataaggatatttgtggtggaacaacttacccc |
238 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16926600 |
aacttaataaggatatttgtggtagaacaacttacccc |
16926563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 16926738 - 16926698
Alignment:
| Q |
25 |
tgttgaaagaagtaatgatatttttagtcaaagaatcaact |
65 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16926738 |
tgttgaaagaagtaatgatatttttagtttaagaatcaact |
16926698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 10636197 - 10636277
Alignment:
| Q |
87 |
acctaagactaatcactactgcatgattatcaccatataatgttagcagtggtgtttgaatgaagatgtcgaaatataatttt |
169 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
10636197 |
acctaagactaatcattattgcatgattatcaccata--atgttagcagtagtgtgtgaatgaagatatcgaaatataatttt |
10636277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 10636144 - 10636193
Alignment:
| Q |
20 |
acaattgttgaaagaagtaatgatatttttagtcaaagaatcaactgaat |
69 |
Q |
| |
|
||||||||||||| |||||||| | |||||| || ||||||||||||||| |
|
|
| T |
10636144 |
acaattgttgaaataagtaatggtttttttaatctaagaatcaactgaat |
10636193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University