View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19033_high_18 (Length: 237)
Name: NF19033_high_18
Description: NF19033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19033_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14588278 - 14588058
Alignment:
| Q |
1 |
ttttaggggagtttatggatgtgacagtgtgaccattttgagcaagaattttggctaactcgaaaaaaggtagtatgtgtcccatagctagccatggcac |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14588278 |
ttttaggggagtttatgaatgtgacagtgtgaccattttgagcaagaattttggctaactcgaaaaaaggtagtatgtgtcccatagctagccatggtac |
14588179 |
T |
|
| Q |
101 |
cattacaacatgaagggacttgacattcttgttctcattctcatgattaacgattgaagccatgggaaggttttgataaattagttaaggatagatgtag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14588178 |
cattacaacatgaagggacttgacattcttgttctcattctcatgattaacaattgaagccatgggaaggttttgaaaaattagttaaggatagatgtag |
14588079 |
T |
|
| Q |
201 |
tggcaaggtttttattgggat |
221 |
Q |
| |
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|||||||||||||| |||||| |
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| T |
14588078 |
tggcaaggtttttactgggat |
14588058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14621936 - 14621717
Alignment:
| Q |
1 |
ttttaggggagtttatggatgtgacagtgtgaccattttgagcaagaattttggctaactcgaaaaaaggtagtatgtgtcccatagctagccatggcac |
100 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14621936 |
ttttaggggagtttatgaacgtgacagtgtgaccattttgagcaagaattttggctaactcgaaaaaaggtagtatgtgtcccatagctagccatggtac |
14621837 |
T |
|
| Q |
101 |
cattacaacatgaagggacttgacattcttgttctcattctcatgattaacgattgaagccatgggaaggttttgataaattagttaaggatagatgtag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14621836 |
cattacaacatgaagggacttgacattcttgttctcattctcatgattaacaattgaagccatgggaaggttttgataaattagttaaggatagatgtag |
14621737 |
T |
|
| Q |
201 |
tggcaaggtttttattgggat |
221 |
Q |
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|||||| |||||||||||||| |
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| T |
14621736 |
tggcaa-gtttttattgggat |
14621717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 12845784 - 12845698
Alignment:
| Q |
29 |
gtgaccattttgagcaagaattttggctaactcgaaaaaaggtagtatgtgtcccatagctagccatggcaccattacaacatgaag |
115 |
Q |
| |
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|||||| |||||||||||||| ||||| ||||| ||| |||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12845784 |
gtgacccttttgagcaagaatcttggccaactcaaaataagggtatatgtgtcccatagctagccatggaaccattacaacatgaag |
12845698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 20491990 - 20491876
Alignment:
| Q |
1 |
ttttaggggagtttatggatgtgacagtgtgaccattttgagcaagaattttggctaactcgaaaaaaggtagtatgtgtcccatagctagccatggcac |
100 |
Q |
| |
|
|||| |||||||||||| | |||||||||||||| ||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| || | |
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| T |
20491990 |
ttttgggggagtttatgaaggtgacagtgtgacccttttgagcaagaatttttgctaactcgaaataagggtacatgtgtcccatagctagccaagggat |
20491891 |
T |
|
| Q |
101 |
cattacaacatgaag |
115 |
Q |
| |
|
||||||||||||||| |
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|
| T |
20491890 |
cattacaacatgaag |
20491876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1354304 - 1354190
Alignment:
| Q |
1 |
ttttaggggagtttatggatgtgacagtgtgaccattttgagcaagaattttggctaactcgaaaaaaggtagtatgtgtcccatagctagccatggcac |
100 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||| ||| ||| ||||||||||||| || || |||| ||| |||||||||||||||||||| | |
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| T |
1354304 |
ttttaggggagttgatgaaggtgacagtgtgaccctttgaagctagaattttggctacttcaaagtaagggtatatatgtcccatagctagccatgggag |
1354205 |
T |
|
| Q |
101 |
cattacaacatgaag |
115 |
Q |
| |
|
|||||||| |||||| |
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|
| T |
1354204 |
cattacaatatgaag |
1354190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1361190 - 1361076
Alignment:
| Q |
1 |
ttttaggggagtttatggatgtgacagtgtgaccattttgagcaagaattttggctaactcgaaaaaaggtagtatgtgtcccatagctagccatggcac |
100 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||| ||| ||| ||||||||||||| || || |||| ||||||||||||||| |||||||| | |
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| T |
1361190 |
ttttaggggagttgatgaaggtgacagtgtgaccctttgaagctagaattttggctacttcaaagtaagggtatatgtgtcccatagccagccatgggag |
1361091 |
T |
|
| Q |
101 |
cattacaacatgaag |
115 |
Q |
| |
|
|||||||| |||||| |
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|
| T |
1361090 |
cattacaatatgaag |
1361076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 51370618 - 51370712
Alignment:
| Q |
21 |
gtgacagtgtgaccattttgagcaagaattttggctaactcgaaaaaaggtagtatgtgtcccatagctagccatggcaccattacaacatgaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||| |||| |||| |||||||||||| |||||||| | |||| |||||||||| |
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| T |
51370618 |
gtgacagtgtgaccattttgagcaagaattttggccaactcaaaataagggagtacgtgtcccatagcaagccatgggagcattgcaacatgaag |
51370712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 29953837 - 29953741
Alignment:
| Q |
19 |
atgtgacagtgtgaccattttgagcaagaattttggctaactcgaaaaaaggtagtatgtgtcccatagctagccatggcaccattacaacatgaag |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||| ||||||||| |||| ||||||||||||||| || || || | |||||| |||||||| |
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|
| T |
29953837 |
atgtgacagtgtgacgattttgagcaagaatcttggccaactcgaaataagggtatatgtgtcccatagcgagtcaagggagcattacgacatgaag |
29953741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 11529800 - 11529654
Alignment:
| Q |
21 |
gtgacagtgtgaccattttgagcaagaattttggctaactcgaaaaaaggtagtatgtgtcccatagctagccatggcaccattacaacatgaagggact |
120 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || || ||| |||| ||||||||||||||||||||| || | |||| |||||||||| | || |
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| T |
11529800 |
gtgacagtgtgacccttttgagcaagaattttggccaattcaaaataagggtatatgtgtcccatagctagccaagggagcattgcaacatgaagaggct |
11529701 |
T |
|
| Q |
121 |
tgacattcttgttctcattctcatgattaacgattgaagccatggga |
167 |
Q |
| |
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|| ||||| |||||||||| ||| |||| |||||| |||||||| |
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|
| T |
11529700 |
tgctattctcattctcattcttatggttaataattgaatccatggga |
11529654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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