View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19033_high_19 (Length: 223)
Name: NF19033_high_19
Description: NF19033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19033_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 32783310 - 32783499
Alignment:
| Q |
17 |
atcatttttaataaatgacagatgaaggacattctcgagtatattttcattatgaaatttcatcaattgaaactcatctcttgcaacatacaatgcaaga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
32783310 |
atcatttttaataaatgacagatgaaggacattctcgagtatattttcattatgaaattcaatcaattgaaactcatctcttgcaacatacactgcaaga |
32783409 |
T |
|
| Q |
117 |
tcatgcactaaatcatgcaatttaaatgtac-aataccaccaccaaagtctataaaatcttgaagaaatgatcttgaccaaagctcttgc |
205 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32783410 |
tcatgcactaaatcatgcaatttaaatgtacaaataccaccaccaaagtctacaaaatcttgaagaaatgatcttgaccaaagctcttgc |
32783499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 49352959 - 49352786
Alignment:
| Q |
17 |
atcatttttaataaatgacagatgaaggacattctcgagtatattttcattatgaaatttcatcaattgaaactcatctcttgcaacatacaatgcaaga |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
49352959 |
atcatttttaagaaatgacagatgaaggacattctcgagtatattttcattatgaaatttcaacaattgaaactcatctcttgcaacatacaatgaaaga |
49352860 |
T |
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| Q |
117 |
tcatgcactaaatcatgcaatttaaatgtac-aataccaccaccaaagtctataaaatcttgaagaaatgatct |
189 |
Q |
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|||||||| ||||||||||||||||| || || |||||||||||||||| |||||| ||||||||||||||| |
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| T |
49352859 |
tcatgcaccaaatcatgcaatttaaaaccacaaaaaccaccaccaaagtctctaaaattttgaagaaatgatct |
49352786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 49341581 - 49341408
Alignment:
| Q |
17 |
atcatttttaataaatgacagatgaaggacattctcgagtatattttcattatgaaatttcatcaattgaaactcatctcttgcaacatacaatgcaaga |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
49341581 |
atcatttttaataaatgacaaatgaaggacattctcgaatatattttcatcatgaaatttcaacaattgaaactcatctcttgcaacatacaatgagaga |
49341482 |
T |
|
| Q |
117 |
tcatgcactaaatcatgcaatttaaatgtac-aataccaccaccaaagtctataaaatcttgaagaaatgatct |
189 |
Q |
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||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| ||||||||| |
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| T |
49341481 |
tcatgcactaaatcatgcaatttaaatccacaaaaaccaccaccaaagtctacaaaatcttgaataaatgatct |
49341408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 19030918 - 19030733
Alignment:
| Q |
17 |
atcatttttaataaatgacagatgaaggacattctcgagtatattttcattatgaaatttcatcaattgaaactcatctcttgcaacatacaatgcaaga |
116 |
Q |
| |
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|||||||| |||||||||||||||||| | |||||| ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| |
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| T |
19030918 |
atcattttcaataaatgacagatgaagaatattctctgatatattttcattatgaaatttcaacaactgaaactcatcttttgcaacatacaatgcaaga |
19030819 |
T |
|
| Q |
117 |
tcatgcactaaatcatgcaatttaaatgtacaa-taccaccaccaaagtctataaaatcttgaagaaatgatcttgaccaaagctc |
201 |
Q |
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|| ||||||||||||||||| ||||| |||| | || |||||| |||| |||||||||||| |||||||||||||||||||| |
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| T |
19030818 |
tcgtgcactaaatcatgcaagttaaagtaacaacaaacatcaccaatgtcttcaaaatcttgaaggaatgatcttgaccaaagctc |
19030733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 29751359 - 29751222
Alignment:
| Q |
6 |
tgtccaagaatatcatttttaataaatgacagatgaaggacattctcgagtatattttcattatgaaatttcatcaattgaaactcatctcttgcaacat |
105 |
Q |
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|||||||| | ||||||| || ||||||||| ||| || ||||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
29751359 |
tgtccaagtaaatcatttgtagtaaatgacaaatggagaacattcttaattatattttcattatggaatttcagcaattgaaactcatctcttgcaacat |
29751260 |
T |
|
| Q |
106 |
acaatgcaagatcatgcactaaatcatgcaatttaaat |
143 |
Q |
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| | ||||||||||||||||||||||||||||||||| |
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| T |
29751259 |
atagggcaagatcatgcactaaatcatgcaatttaaat |
29751222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 29744326 - 29744183
Alignment:
| Q |
6 |
tgtccaagaatatcatttttaataaatgacagatgaaggacattctcgagtatattttcattatgaaatttcatcaattgaaactcatctcttgcaacat |
105 |
Q |
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|
|||||||| | ||||||| || ||||||||| ||| || |||||||| | ||||||||||||||| ||||| | ||||||||||| |||||||||||||| |
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| T |
29744326 |
tgtccaagcaaatcatttgtagtaaatgacaaatggagaacattctcaattatattttcattatggaattttaacaattgaaactaatctcttgcaacat |
29744227 |
T |
|
| Q |
106 |
acaatgcaagatcatgcactaaatcatgcaatttaaatgtacaa |
149 |
Q |
| |
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| | |||||||||||||||||||||||||||||||||| |||| |
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| T |
29744226 |
atagggcaagatcatgcactaaatcatgcaatttaaatgcacaa |
29744183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 29601935 - 29602072
Alignment:
| Q |
6 |
tgtccaagaatatcatttttaataaatgacagatgaaggacattctcgagtatattttcattatgaaatttcatcaattgaaactcatctcttgcaacat |
105 |
Q |
| |
|
|||||||| | ||||||| || ||||||||| ||| || ||||||| | ||||||||||||||| | ||||| |||||||||||||||||| ||||||| |
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| T |
29601935 |
tgtccaagtaaatcatttgtagtaaatgacaaatggagaacattcttaattatattttcattatggagtttcagcaattgaaactcatctctggcaacat |
29602034 |
T |
|
| Q |
106 |
acaatgcaagatcatgcactaaatcatgcaatttaaat |
143 |
Q |
| |
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| | ||||||||||||||||||||||||||||||||| |
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| T |
29602035 |
atagggcaagatcatgcactaaatcatgcaatttaaat |
29602072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 35933788 - 35933824
Alignment:
| Q |
97 |
ttgcaacatacaatgcaagatcatgcactaaatcatg |
133 |
Q |
| |
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|||||||||||||||||||||| ||||| |||||||| |
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| T |
35933788 |
ttgcaacatacaatgcaagatcgtgcaccaaatcatg |
35933824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 35158408 - 35158282
Alignment:
| Q |
75 |
ttcatcaattgaaactcatctcttgcaacatacaatgcaagatcatgcactaaatcatgcaatttaaatgtacaataccaccaccaaagtctataaaatc |
174 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||||||||||||| |||||||||| ||| |||||||| ||| | || | || |||| |||| |||||||| |
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|
| T |
35158408 |
ttcaacaattgaaactcgtctcttgaaacatacaatgcaaggtcatgcactagatcgtgcaatttgaatttgca--agcataaccatagtcaataaaatc |
35158311 |
T |
|
| Q |
175 |
ttgaagaaatgatcttgaccaaagctctt |
203 |
Q |
| |
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||||||||| |||||||||| ||||||| |
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| T |
35158310 |
ttgaagaaaagatcttgaccgtagctctt |
35158282 |
T |
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