View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19033_high_3 (Length: 511)
Name: NF19033_high_3
Description: NF19033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19033_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 63 - 466
Target Start/End: Original strand, 35631423 - 35631824
Alignment:
| Q |
63 |
ttattagattaaattaataaaaagttctccaaacctgtcactgtttcaagtaaacttggaggagccatatctacaaaacaacaacaaaacaatgaagtga |
162 |
Q |
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| T |
35631423 |
ttattagattaaattaataaaaagtt-tccaaacctgtcgctgtttcaagtaaacttggaggagccatatctacaaaattcaaagaaaacaatgaagtga |
35631521 |
T |
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| Q |
163 |
ataattgagatgatgaagatgaatatataaggtgcgatgaatggaagtgacacgtggcatagcttcgttttggacacaaaaacagagacaagtcacagga |
262 |
Q |
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| T |
35631522 |
ataattgagatgatgaagatgaatatataaggtgcaatgaatggaagtgacacgtggcatagcttcgttttggacacaaaa-cagagacaagtcacagga |
35631620 |
T |
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| Q |
263 |
attgggaggaacatgacgcatgcatgacaatacgtgagtagtgaaggaatcaaggtttttgtttttgccttcatcttggtcttgttacgtttcttaaaat |
362 |
Q |
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| T |
35631621 |
attgggaggaacatgacgcatgcatgacaacacgtgagtagtgaaggaatcaaggtttttgtttttgccttcatcttggtcttgttacgtttcttaaaat |
35631720 |
T |
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| Q |
363 |
tttgtaatgttgttcttttataagtaaaaattgaaacannnnnnnggtctcatcctaattaagattgattaaatggttgagaaatgaccagctacgtgat |
462 |
Q |
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| T |
35631721 |
tttgtaatgttgttcttttataagtaaaaattgaaacatttttttggtctcatcctaattaagattgattaagtggttgagaaatgaccagctacgtgat |
35631820 |
T |
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| Q |
463 |
agtg |
466 |
Q |
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| T |
35631821 |
agtg |
35631824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 35631371 - 35631406
Alignment:
| Q |
10 |
aagaaaataggtcctgaattgaacaattcaaccgtt |
45 |
Q |
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| T |
35631371 |
aagaatataggtcctgaattgaacaattcaaccgtt |
35631406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 400
Target Start/End: Original strand, 35636460 - 35636503
Alignment:
| Q |
357 |
taaaattttgtaatgttgttcttttataagtaaaaattgaaaca |
400 |
Q |
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| T |
35636460 |
taaaattttgtaatgatgttcaattataagtaaaaattgaaaca |
35636503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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