View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19033_high_6 (Length: 403)
Name: NF19033_high_6
Description: NF19033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19033_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 39225383 - 39225757
Alignment:
| Q |
17 |
aaatactaccacataattctttgattccccctccatacacggtataatatgacagatttactttactacaattgaattttacagcagtaactacatagaa |
116 |
Q |
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| T |
39225383 |
aaatactaccacataattctttgattccccctccatacacggtataatatgacagatttactttactacaattgaattttacagcagtaactacatagaa |
39225482 |
T |
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| Q |
117 |
ttgaatnnnnnnngaaggataaattaggctcatatctaatcttttaaagcacatttgaatagtggaattcagctgtaacatatttgttcactgaaaatgg |
216 |
Q |
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| T |
39225483 |
ttgaataaaaaaagaaggataaattaggctcatatctaatcttttaaagcacatttgaatagtggaattcagctgtaacatatttgttcactgaaaatgg |
39225582 |
T |
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| Q |
217 |
agggcataaacatcttctcatcttccctcatccataagtaatgttaactcccatatatcaaataacatcaacgacatgtattatttccatgttatacttg |
316 |
Q |
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| T |
39225583 |
agggcataaacatcttctcatcttccctcatccataagtaatgttaactcccatatatcaaataacatcaacgacatgtattatttccatgtcatacttg |
39225682 |
T |
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| Q |
317 |
gctatttctcatttccctatctaatgtcaaccatgatactgtgtaccctatggaatttactgcttcgttaagaataa |
393 |
Q |
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| T |
39225683 |
gctatttctcatttccctatctaatgtcaaccatgatactgtgtaccctatgg--tttactgcttcgttaaaaataa |
39225757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 39378540 - 39378455
Alignment:
| Q |
33 |
ttctttgattccccctccatacacggtataatatgacagatttactttactacaattgaattttacagcagtaactacatagaattgaa |
121 |
Q |
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| T |
39378540 |
ttctttgaatccccctacatacacagtataataagacagatttactttac---aattgaattttacagcagtaactacatagaattgaa |
39378455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 34719841 - 34719769
Alignment:
| Q |
317 |
gctatttctcatttccctatctaatgtcaaccatgatactgtgtaccctatggaatttactgcttcgttaagaa |
390 |
Q |
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| T |
34719841 |
gctatttctcatttctatatctaatgccagccatgataccatgta-cctatgggatttattgcttctttaagaa |
34719769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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