View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19033_high_8 (Length: 331)
Name: NF19033_high_8
Description: NF19033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19033_high_8 |
 | |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 59119 - 59438
Alignment:
| Q |
1 |
gaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59119 |
gaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcac |
59218 |
T |
|
| Q |
101 |
atttcattatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccatggatggttggtataagacctctggacacctaaaacgctcagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
59219 |
atttcattatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccatggatggttggtataagacctctggacacctaaaacgctcagc |
59318 |
T |
|
| Q |
201 |
gccaatagtgatgacttgcccatcaggcaactcatagctcttctccactgcagagctggtcttggatgtctctagctcttgctcatagtcaagggcaatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59319 |
gccaatagtgatgacttgcccatcaggcaactcatagctcttctccactgcagagctggtcttggatgtctctagctcttgctcatagtcaagggcaatg |
59418 |
T |
|
| Q |
301 |
taagccagcttttccttcat |
320 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
59419 |
taagccagcttttccttcat |
59438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 8690074 - 8689756
Alignment:
| Q |
1 |
gaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcac |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || |||||||| || |||||||| || ||||||||||| |||| |||||||||||| |||||||| | |
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|
| T |
8690074 |
gaaatttccttgctcattctatcagcaatgcctgggaacatggtagttcctcctgaaagcacaatgttaccgtacaagtctttcctgatatcaacatcgc |
8689975 |
T |
|
| Q |
101 |
atttcattatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccatggatggttggtataagacctctggacacctaaaacgctcagc |
200 |
Q |
| |
|
| ||||| ||||||||||| |||||||| ||||| ||||| ||||||||||| | ||| ||||||||| | | |||||||||||| || |||||||| | |
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|
| T |
8689974 |
acttcatgatggagttgtatgtggtctcgtgaatgcctgctgcttccattcctatcatagatggttggaacaggacctctggacatctgaaacgctcgtc |
8689875 |
T |
|
| Q |
201 |
gccaatagtgatgacttgcccatcaggcaactcatagctcttctccactgcagagctggtcttggatgtctctagctcttgctcatagtcaagggcaatg |
300 |
Q |
| |
|
|| || ||||| || || ||||||||||| || ||||||||||| || | ||||||||| ||| |||||| ||||||||||||||||||||||||||| |
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| T |
8689874 |
tccgatggtgatcacctgtccatcaggcaattcgtagctcttctcgacggatgagctggtcctggctgtctccagctcttgctcatagtcaagggcaatg |
8689775 |
T |
|
| Q |
301 |
taagccagcttttccttca |
319 |
Q |
| |
|
|| | |||||||| |||| |
|
|
| T |
8689774 |
tatgaaagcttttctttca |
8689756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 37050302 - 37050544
Alignment:
| Q |
3 |
aatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacat |
102 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| |||| ||| || | || ||||||||||| || || ||||| |||||||||||||| |
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|
| T |
37050302 |
aatctccttgctcattctatcagcaataccagggaacattgttgaaccaccactcaacacgatgttaccatagagatccttcctaatgtcaacatcacac |
37050401 |
T |
|
| Q |
103 |
ttcattatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccatggatggttggtataagacctctggacacctaaaacgctcagcgc |
202 |
Q |
| |
|
||||| || ||||| | || |||||||| || || | || |||||| || | ||||||||| ||| | || || ||||| || | || | ||||| | |
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|
| T |
37050402 |
ttcatgatcgagttaaatgttgtctcatggataccaggagattccatccctatcatggatggctggaacaaaacttctgggcatcggaatctttcagcac |
37050501 |
T |
|
| Q |
203 |
caatagtgatgacttgcccatcaggcaactcatagctcttctc |
245 |
Q |
| |
|
| || ||||| || ||||||||||| | ||||||| ||||||| |
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|
| T |
37050502 |
cgatcgtgatcacctgcccatcaggtagctcataggtcttctc |
37050544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 41388647 - 41388335
Alignment:
| Q |
7 |
tccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatttca |
106 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||| || ||||| || ||||||||||| ||||||||||| || ||||| ||||||||||| |||| |
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|
| T |
41388647 |
tccttgctcattctgtcagcaataccagggaacatagtagtaccaccactaaggacaatgtttccatacaggtcctttctgatatcaacatcacacttca |
41388548 |
T |
|
| Q |
107 |
ttatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccatggatggttggtataagacctctggacacctaaaacgctcagcgccaat |
206 |
Q |
| |
|
| || |||||||| || ||||| |||||||| ||||||||||||| |||||||| || ||| | | ||||| ||||| | ||||||||||| ||||| |
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|
| T |
41388547 |
tgattgagttgtatgtcgtctcgtgaattccaacagcttccattccaaccatggaaggctggaaaagaacctcaggacaacggaaacgctcagcaccaat |
41388448 |
T |
|
| Q |
207 |
agtgatgacttgcccatcaggcaactcatagctcttctccactgcagagctggtcttggatgtctctagctcttgctcatagtcaagggcaatgtaagcc |
306 |
Q |
| |
|
|||||| | || |||||||| | ||||||||||||||| || ||||| || || || || || || |||||||||||| | ||||||||||| |||| | |
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|
| T |
41388447 |
agtgattatctgtccatcaggaagctcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagac |
41388348 |
T |
|
| Q |
307 |
agcttttccttca |
319 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41388347 |
agcttttccttca |
41388335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 1261971 - 1262113
Alignment:
| Q |
7 |
tccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatttca |
106 |
Q |
| |
|
||||||||||| | |||||||| |||||||||||||| | |||||| || ||||| || ||||| || || ||||| || ||||||||||| |||| |
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|
| T |
1261971 |
tccttgctcatacggtcagcaattccaggaaacatggtagaacctccactaagcacaatatttccatatagatccttcctaatatcaacatcacacttca |
1262070 |
T |
|
| Q |
107 |
ttatggagttgtaagtggtctcatgaattcctgcagcttccat |
149 |
Q |
| |
|
| ||||||||||| || || ||||| ||||| | ||||||||| |
|
|
| T |
1262071 |
tgatggagttgtatgtagtttcatggattccagtagcttccat |
1262113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 43646989 - 43647212
Alignment:
| Q |
4 |
atctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatt |
103 |
Q |
| |
|
|||||||||||||| | |||||||| ||||| ||||| |||| ||| || || |||||||| || ||||| || || ||||| || |||||||| | |
|
|
| T |
43646989 |
atctccttgctcatacggtcagcaataccagggaacatagttgaaccaccactaagaacaatgttgccgtacagatcctttctgatatccacatcacact |
43647088 |
T |
|
| Q |
104 |
tcattatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccatggatggttggtataagacctctggacacctaaaacgctcagcgcc |
203 |
Q |
| |
|
|||| || |||||||| |||||||| |||||||| |||||||||||||| | ||| ||||||||| | | ||| ||||| || | || | |||||| || |
|
|
| T |
43647089 |
tcatgatagagttgtaggtggtctcgtgaattccagcagcttccattccgatcattgatggttggaaaaggacttctgggcaacggaacctctcagctcc |
43647188 |
T |
|
| Q |
204 |
aatagtgatgacttgcccatcagg |
227 |
Q |
| |
|
||| ||||| ||||| |||||||| |
|
|
| T |
43647189 |
aattgtgataacttgtccatcagg |
43647212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 319
Target Start/End: Complemental strand, 68686 - 68371
Alignment:
| Q |
4 |
atctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatt |
103 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||| || ||||| || | || ||||| ||||| || || || || || ||||||||||| | |
|
|
| T |
68686 |
atctccttgctcatcctatcagcaatgccggggaacatagtcgtaccaccactcaatacgatgtttccatagagatcctttctaatatcaacatcacact |
68587 |
T |
|
| Q |
104 |
tcattatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccatggatggttggtataagacctctggacacctaaaacgctcagcgcc |
203 |
Q |
| |
|
|||| || || ||||| || || ||||| || || | ||||||||| || | ||||||||| ||| | | || || ||||| | ||||| || || || |
|
|
| T |
68586 |
tcatgattgaattgtatgttgtttcatgtataccaggagcttccataccaatcatggatggctggaagagtacttcaggacaacggaaacgttcggcacc |
68487 |
T |
|
| Q |
204 |
aatagtgatgacttgcccatcaggcaactcatagctcttctccactgcagagctggtcttggatgtctctagctcttgctcatagtcaagggcaatgtaa |
303 |
Q |
| |
|
|| ||||| || || |||||||| ||||||||||||||||| || || ||||| ||||| || || |||| |||||| ||||| ||||| |||||||| |
|
|
| T |
68486 |
tattgtgatcacctgtccatcaggtaactcatagctcttctcaacagctgagctcgtcttcgaggtttctaactcttgttcataatcaagagcaatgtag |
68387 |
T |
|
| Q |
304 |
gccagcttttccttca |
319 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
68386 |
gatagtttttccttca |
68371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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