View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19033_low_1 (Length: 596)
Name: NF19033_low_1
Description: NF19033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19033_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 15 - 585
Target Start/End: Original strand, 33490992 - 33491567
Alignment:
| Q |
15 |
aataatttctttagaggaatttggtgctgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttct |
114 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33490992 |
aataatttctttacaggaatttggtgctgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttct |
33491091 |
T |
|
| Q |
115 |
atatataaccaaccttcttatgctcatcaagttagttcttgatccattatttacatgatacttttaatctttactagctctgggtagcactttgatgata |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33491092 |
atatataatcaaccttcttatgctcatcaagttagttcttgatccattatttacatgatacttttaatctttactagctctgggtagcactttgatgata |
33491191 |
T |
|
| Q |
215 |
ttggagtgccaatgtcatgtgacatt-gccaaccccaatatcatcaaaacgctacccgctagctccctaacccttcttgtgtttgatc---taatactaa |
310 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| |||| |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
33491192 |
ttggggtgccaatgtcatgtgacattggccaaccacaatgtcatcaaagcgctacccgctagctccctaatccttcttgtgtttgatctaataatactaa |
33491291 |
T |
|
| Q |
311 |
tttgagggtttttgcttgaagccttttaatggctgacacacaaaattcgacaaaaaattgaatggttaacacaattaaaacatgtggtgttgttaatatt |
410 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33491292 |
tttaagagtttttgcttgaagccttttaatggctgacacacaaaattcgacaaaaaattgaatggttaacacaattaaaacatgtggtgttgttaatatt |
33491391 |
T |
|
| Q |
411 |
acattaagtgaatgattatgaatataaaaagttgtcacaactcaatttatcatccattgcacgtaattaactacaattttggcactattaaccataattg |
510 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33491392 |
acattaagtgaatggttatgaatataaaaagttgtcgcaactctgtttatcatccattgcacgtaattaactacaattttggcactattaaccataattg |
33491491 |
T |
|
| Q |
511 |
tagtttagcttta-nnnnnnnnnacttttggtttacttataagacaaacctcaggttttcttccaacacttgatga |
585 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33491492 |
tagtttagctttattttttttttacttttggtttacttacaagacaaacctaaggttttcttccaacacttgatga |
33491567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 33419821 - 33419974
Alignment:
| Q |
42 |
tgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttctatatataaccaaccttcttatgctcat |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33419821 |
tgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttctatatataaccaaccttcttatgctcat |
33419920 |
T |
|
| Q |
142 |
caagttagttcttgatccattatttacatgatacttttaatctttactagctct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33419921 |
caagttagttcttgatccattatttacatgatacttttaatctttactagctct |
33419974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 272 - 585
Target Start/End: Original strand, 33412830 - 33413140
Alignment:
| Q |
272 |
ctagctccctaacccttcttgtgtttgatctaatactaatttgagggtttttg-cttgaagccttttaatggctgacacacaaaattcgacaaaaaattg |
370 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
33412830 |
ctagctctctaacccttcttga-tttgatctaatactaatttgagggttcttggcttgaagccttttaatggctgacccacaaaattcgataaaaaattg |
33412928 |
T |
|
| Q |
371 |
aatggttaacacaattaaaacatgtggtgttgttaatattacattaagtgaatgattatgaatataaaaagttgtcacaactcaatttatcatccattgc |
470 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||| ||||| || ||||| | | |||||| |||||||||| | |||||| ||||||||||||||| |
|
|
| T |
33412929 |
aatggttaacacaattaaaatatgtggtatggtta--attacgttcagtgatggttaatgaatctaaaaagttgccgcaactc-gtttatcatccattgc |
33413025 |
T |
|
| Q |
471 |
acgtaattaactacaattttg-gcactattaaccataattgtagtttagctttannnnnnnnnacttttggtttacttataagacaaacctcaggttttc |
569 |
Q |
| |
|
| | |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| | | ||||||||||| |||| || |
|
|
| T |
33413026 |
atgcaattaactacgattttgagcactattaaccataattgtagtttagcttt-cctttttttacttttggtttagtcacaagacaaacctaaggtattt |
33413124 |
T |
|
| Q |
570 |
ttccaacacttgatga |
585 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33413125 |
ttccaacacttgatga |
33413140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 28812776 - 28812655
Alignment:
| Q |
35 |
ttggtgctgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttctatatataaccaaccttctta |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28812776 |
ttggtgctgttgtgggagtcttgtctcataatcttgcagaccttaatgatttacagaagtgtcaaggaagctacatttctatatatgaccaaccttctta |
28812677 |
T |
|
| Q |
135 |
tgctcatcaagttagttcttga |
156 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28812676 |
tgctcatcaagttagttcttga |
28812655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 272 - 585
Target Start/End: Original strand, 33419967 - 33420273
Alignment:
| Q |
272 |
ctagctccctaacccttcttgtgtttgatctaatactaatttgagggtttttgcttgaagccttttaatggctgacacacaaaa-ttcgacaaaaaattg |
370 |
Q |
| |
|
||||||| |||| | ||||||||||||||||||| |||||||||| | || || |||||||||||| ||||||| |||| ||||||||| ||||| |
|
|
| T |
33419967 |
ctagctctctaatcattcttgtgtttgatctaatgctaatttgag---tattcct----gccttttaatggttgacacaaaaaaattcgacaaataattg |
33420059 |
T |
|
| Q |
371 |
aatggttaacacaattaaaacatgtggtgttgttaatattacattaagtgaatgatta-tgaatataaaaagttgtcacaactcaatttatcatccattg |
469 |
Q |
| |
|
||||||||||||||||||| ||||| | | |||||| ||| || | || ||| ||| |||||||| |||| |||| ||||||| ||||||||| |||| |
|
|
| T |
33420060 |
aatggttaacacaattaaattatgtgttatggttaat--tacgtttaatggatggttaatgaatatataaaggtgtcgcaactca-tttatcatcaattg |
33420156 |
T |
|
| Q |
470 |
cacgtaattaactacaattttg-gcactattaaccataattgtagtttagctttannnnnnnnnacttttggtttacttataagacaaacctcaggtttt |
568 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||||||||| ||| || |||||||||| |||| || |
|
|
| T |
33420157 |
cacgtaattaactacaattttgagcactattaaccataattgtaatttagcttaatttttttttacttttggttcactcatgagacaaacctaaggtatt |
33420256 |
T |
|
| Q |
569 |
cttccaacacttgatga |
585 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
33420257 |
cttccaacacttgatga |
33420273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 33412742 - 33412837
Alignment:
| Q |
96 |
tcaaggaagctacatttctatatataaccaaccttcttatgctcatcaagttagttcttgatccattatttacatgatacttttaatctttactagctct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || ||||||| |||||||||||||||||||| |
|
|
| T |
33412742 |
tcaaggaagctacatttctatatataacca---ttcttatgctcatcaagttagttcttgatcaattgttggcatgata-ttttaatctttactagctct |
33412837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 318
Target Start/End: Complemental strand, 28812629 - 28812598
Alignment:
| Q |
287 |
ttcttgtgtttgatctaatactaatttgaggg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28812629 |
ttcttgtgtttgatctaatactaatttgaggg |
28812598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 3647554 - 3647508
Alignment:
| Q |
195 |
tgggtagcactttgatgatattggagtgccaatgtcatgtgacattg |
241 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||||||||||||||||||| |
|
|
| T |
3647554 |
tgggtagcacttgggtgacattggggtgccaatgtcatgtgacattg |
3647508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 22435345 - 22435387
Alignment:
| Q |
199 |
tagcactttgatgatattggagtgccaatgtcatgtgacattg |
241 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
22435345 |
tagcacttgggtgatattggggtgccaatgtcatgtgacattg |
22435387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 15057183 - 15057138
Alignment:
| Q |
196 |
gggtagcactttgatgatattggagtgccaatgtcatgtgacattg |
241 |
Q |
| |
|
||||||||||||| ||| ||||| ||| |||||||||||||||||| |
|
|
| T |
15057183 |
gggtagcactttggtgacattggggtgtcaatgtcatgtgacattg |
15057138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 18182492 - 18182537
Alignment:
| Q |
196 |
gggtagcactttgatgatattggagtgccaatgtcatgtgacattg |
241 |
Q |
| |
|
||||||||||| | ||| ||||| |||||||||||||||||||||| |
|
|
| T |
18182492 |
gggtagcacttgggtgacattggggtgccaatgtcatgtgacattg |
18182537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 18182668 - 18182623
Alignment:
| Q |
196 |
gggtagcactttgatgatattggagtgccaatgtcatgtgacattg |
241 |
Q |
| |
|
||||||||||| | ||| ||||| |||||||||||||||||||||| |
|
|
| T |
18182668 |
gggtagcacttgggtgacattggggtgccaatgtcatgtgacattg |
18182623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University