View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19033_low_25 (Length: 204)
Name: NF19033_low_25
Description: NF19033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19033_low_25 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 54081371 - 54081202
Alignment:
| Q |
35 |
gcgacttctaccacctgatcccgaaccagcccgagagcctgcatatgagcctgcttccgaccctgccccggaaccagacccagaactagaagacgaagag |
134 |
Q |
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| T |
54081371 |
gcgacttctaccacctgatcccgaaccagcccgagagcctgcatatgagcctgcttccgaccctgccccggaaccagacccagaactagaagacgaagag |
54081272 |
T |
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| Q |
135 |
gacgatgaacttgaggaagagctagaaccagaaccagagcctgcaccagctccggctccagagccactgc |
204 |
Q |
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| T |
54081271 |
gacgatgaacttgaggaagagctagaaccagaaccagagcctgcaccagctccggctccagagccactgc |
54081202 |
T |
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Target: chr4; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 35 - 200
Target Start/End: Complemental strand, 54084774 - 54084609
Alignment:
| Q |
35 |
gcgacttctaccacctgatcccgaaccagcccgagagcctgcatatgagcctgcttccgaccctgccccggaaccagacccagaactagaagacgaagag |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || || ||||||||||| ||||| |
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| T |
54084774 |
gcgacttctaccacctgatcccgaaccagcccgagagcctgcatatgagcctgcctccgaccctgccccagaaccggaaccggaactagaagatgaagat |
54084675 |
T |
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| Q |
135 |
gacgatgaacttgaggaagagctagaaccagaaccagagcctgcaccagctccggctccagagcca |
200 |
Q |
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|| ||||||||||||||||| ||||||||||| |||||||| || || |||||||||||||||||| |
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| T |
54084674 |
gatgatgaacttgaggaagaactagaaccagagccagagccagctcctgctccggctccagagcca |
54084609 |
T |
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