View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19033_low_4 (Length: 447)
Name: NF19033_low_4
Description: NF19033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19033_low_4 |
 | |
|
| [»] scaffold0075 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0075 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 16570 - 16996
Alignment:
| Q |
1 |
tacctattcttagaagttaataggaaataataagtgtattagtaatcaataaaatttactaagtttctagtcgatttgtaatagctaagatatgatatta |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
16570 |
tacctattcctagaagttaataggaaataataagtctattagtaatcaataaaatttactaagtttctagtcgatttgtaatagctaagatatgatatga |
16669 |
T |
|
| Q |
101 |
ggatagttgattgtgcatcaagttatcctaatgtcatgtatgaatgtgaagtataaaaaatgttgaagtgttgttattcaaattagcaatatcaagaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16670 |
ggatagttgattgtgcatcaagttatcctaatgt-----atgaatgtgaagtataaaaaatgttgaagtgttgttattcaaattagcaatatcaagaatt |
16764 |
T |
|
| Q |
201 |
ggatcggtttcattgatgaaggcgagttttttcttcacacgaagagcatgctacatggaacgactccatgcgaggtacttacaaccattaagctttggag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16765 |
ggatcggtttcattgatgaaggcgagttttttcttcacacgaagagcatgctacatggaacgactccatgcgaggtagttacaaccattaagctttggag |
16864 |
T |
|
| Q |
301 |
aaacaacaacaaaattcaatcattcacttagatgcacatagaagatcgaatcagaatcaggttgttgaagataagggaaacttaacatggaggcataatg |
400 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16865 |
aaacaacaacaaaattcaaacattcacttagatgcacatagaagatcgaatcagaatcaggttgttgaagataagggaaacttaacatggaggcataatg |
16964 |
T |
|
| Q |
401 |
acgagtaagaaattaaatcaatcaaagaaaac |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
16965 |
acgagtaagaaattaaatcaatcaaagaaaac |
16996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University