View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19033_low_9 (Length: 327)
Name: NF19033_low_9
Description: NF19033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19033_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 48 - 327
Target Start/End: Original strand, 42012893 - 42013174
Alignment:
| Q |
48 |
gtcaaataatacaaatttagttcttaaattagtcacgataaaacataaagtaggaaaattatgnnnnnnnn---ctcctctggtcggcatattaactgac |
144 |
Q |
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| T |
42012893 |
gtcaaataatacaaatttagttcttaaattagtcacgataaaacataaagtaggaaaattatgaaaaaaaaaaactcctctggtcggcacattaactgac |
42012992 |
T |
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| Q |
145 |
ccatagctgaatgacacgtgtcatttaacccataactgacccaatacttggcaatgttacattttatttttggaagaaagtgattttggtagactgaaga |
244 |
Q |
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| T |
42012993 |
ccatagctgaatgacacgtgtcatttaacccataactgacccaatacttg-caatgttacattttatttttggaagaaagtgattttggtagactgaaga |
42013091 |
T |
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| Q |
245 |
aaaagaaaatgataaacaaacaatcaataaagaacttgttgatttgatcaatccgtttgatattttaattttttaacaaaatt |
327 |
Q |
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| T |
42013092 |
aaaagaaaatgataaacaaacaatcaataaagaacttgttgatttgatcaatccgtttgatattttaattttttaacaaaatt |
42013174 |
T |
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