View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19034_high_2 (Length: 416)
Name: NF19034_high_2
Description: NF19034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19034_high_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 41120918 - 41121318
Alignment:
| Q |
17 |
accaaccaagccaaaatgtagaagaaatcatgaggatcatacaagaagcgagggtacaaggatcgaaagctggcgatggtggtcaagctggcaccggttc |
116 |
Q |
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| T |
41120918 |
accaaccaagccaaaatgtagaagaaatcatgaggatcatacaagaagcgagggtacaaggatcgaaagctggcgatggtggtgaagctggcaccggttc |
41121017 |
T |
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| Q |
117 |
catgaacgtc-gaagatgagatgacaatcgaggaaattgatgtcagggatgagtatgaaaatgtgtgattgaggccttcatttggtgaatggatggcatt |
215 |
Q |
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| T |
41121018 |
catgaacgtcagaagatgagatga----cgatgaaattgatgtcagggatgactatgaaaatgtgtgattgaggccttcatttggtgaatggatggcatt |
41121113 |
T |
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| Q |
216 |
ctaccttttctgttggcattgtatttgaagtaattttgatcc----nnnnnnnntaatataagtggtaactaactcagtaatcagtagctctatcatact |
311 |
Q |
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| T |
41121114 |
ctaccttttctgttggcattgtatttgaagtaatttttatccaaaaaaaaataaaaatataagtggtaactaactcagtaatcagtagttctatcatact |
41121213 |
T |
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| Q |
312 |
tatacataatagtaatgctgaacctcgcgaaaattaattcaacgacaacatcgcaacactagttccaaacacgtttttgaaaagtgtcaaaaaatttcaa |
411 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41121214 |
tatatataatagtaaggctgaacctcgcgaaaattaattcaacgacaacatcgcaacactagttccaaacaagtttttgaaaagtgtcaaaaaatttcaa |
41121313 |
T |
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| Q |
412 |
tccac |
416 |
Q |
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| T |
41121314 |
tccac |
41121318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 41127303 - 41127348
Alignment:
| Q |
17 |
accaaccaagccaaaatgtagaagaaatcatgaggatcatacaaga |
62 |
Q |
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| T |
41127303 |
accaaccaagccaaagtgtggaagaaatcatgaggatcatacaaga |
41127348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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