View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19034_high_3 (Length: 416)
Name: NF19034_high_3
Description: NF19034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19034_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 23663372 - 23663778
Alignment:
| Q |
1 |
agtcagaatgcaaattttccggtatgcttcatctgtgaaattgaacaagagtaatgttgtgtttcaatgcttacctggacactgcagagagattcaaact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23663372 |
agtcagaatgcaaattttccggtatgcttcatctgtgaaattgaacaagagtaatgttgtgtttcaatgcttaccc-----------agagattcaaact |
23663460 |
T |
|
| Q |
101 |
ctgaaatggtatgcatttgtgcaagaactacttcagccccttgtcggtcaacttgacgttcctaggcgtcaaatttatacgtacgttagg--cgttaaag |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
23663461 |
ctgaaatggtatgcatttgtgcaagaactacttcagccccttgtcggtcaacttgacgttcctaggcgtcaaatttatacgtacgttaggaacgctaaag |
23663560 |
T |
|
| Q |
199 |
aattagcaaat------------------ggattatnnnnnnncactttccaacaggcatttctcttctgctgactgctctatttactcaacgtttacat |
280 |
Q |
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||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23663561 |
aattagcaaattgaaggaaattagcaaatggattataaaaaaacactttccaacaggcgtttctcttctgctgactgctctatttactcaacgtttacat |
23663660 |
T |
|
| Q |
281 |
atacaaatgccatccttctacaatcgtgttatcctatttattatataatctaactacgatctaacaaatgaactaactaccctaactgtcactaactaac |
380 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23663661 |
atacaaatgccatccttctacaatcgtgttctcctatttattatataatctaactacgatctaacaaatgaactaactaccctaactgtcactaactaac |
23663760 |
T |
|
| Q |
381 |
atctcctctatcttctat |
398 |
Q |
| |
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| T |
23663761 |
atctcctctatcttctat |
23663778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 23702609 - 23702428
Alignment:
| Q |
7 |
aatgcaaattttccggtatgcttcatctgtgaaattgaacaagagtaatgttgtgtttcaatgcttacctggacactgcagagagattcaaactctgaaa |
106 |
Q |
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|||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23702609 |
aatgcaaactttacggtacgcttcatctgtgaaattgaataagagtaatgttgtgtttcaatgcttacctggacactgcagagagattcaaactctgaaa |
23702510 |
T |
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| Q |
107 |
tggtatgcatttgtgcaagaactacttcagccccttgtcggtcaacttgacgttcctaggcgtcaaatttatacgtacgtta |
188 |
Q |
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| T |
23702509 |
tggtatgcatttgtgcaagaactacttcagccccttgtcggtcaacttgacgttcctaggcgtcaaatttatatgtatgtta |
23702428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 224 - 398
Target Start/End: Complemental strand, 23702345 - 23702173
Alignment:
| Q |
224 |
cactttccaacaggcatttctcttctgctgactgctctatttactcaacgtttacatatacaaatgccatccttctacaatcgtgttatcctatttatta |
323 |
Q |
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|||||||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||||| ||||| | ||||||||| |
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| T |
23702345 |
cactttccaaaaggcgtttcccttctgctgactgctctatttactcaatgtttacatataagaatgccatccctttacaattgtgttct--tatttatta |
23702248 |
T |
|
| Q |
324 |
tataatctaactacgatctaacaaatgaactaactaccctaactgtcactaactaacatctcctctatcttctat |
398 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23702247 |
tataatctaactacgatctaacaaatcaactaactaccctaactgtcactaactaacgtctcctctatcttctat |
23702173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 225 - 398
Target Start/End: Complemental strand, 23720632 - 23720460
Alignment:
| Q |
225 |
actttccaacaggcatttctcttctgctgactgctctatttactcaacgtttacatatacaaatgccatccttctacaatcgtgttatcctatttattat |
324 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||||| |
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| T |
23720632 |
actttccaacaggcgtttcccttctgctgactgctctatttactcaacgtttacatacaagaatgacatccttctacaatcgtgttctcctatttattat |
23720533 |
T |
|
| Q |
325 |
ataatctaactacgatctaacaaatgaactaactaccctaactgtcactaactaacatctcctctatcttctat |
398 |
Q |
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||||||||||||| |||||||||| ||||||| ||||||| |||||||||||||| |||| | |||| ||||| |
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| T |
23720532 |
ataatctaactac-ctctaacaaatcaactaaccaccctaaatgtcactaactaacgtctcatttatcctctat |
23720460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 23746418 - 23746486
Alignment:
| Q |
72 |
tacctggacactgcagagagattcaaactctgaaatggtatgcatttgtgcaagaactacttcagcccc |
140 |
Q |
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||||| ||||||||| |||||||||||||||||| | || |||||| ||||| |||| ||||| |||| |
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| T |
23746418 |
tacctagacactgcatagagattcaaactctgaagggataggcatttctgcaacaactccttcaacccc |
23746486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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