View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19034_high_7 (Length: 288)
Name: NF19034_high_7
Description: NF19034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19034_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 4419824 - 4419897
Alignment:
| Q |
199 |
ctaacaatctgatttgtatttctgtcaaaaagatgagagcaaactgtccaagtaatcaattcctaggtcctgaa |
272 |
Q |
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| T |
4419824 |
ctaacaatctaatttgtatttctgtcaaaaagatgagagcaaactgtccaagtaatcaattcctaggtcctgaa |
4419897 |
T |
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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 4419702 - 4419764
Alignment:
| Q |
81 |
gtatatggcagcagtttgttcatcttcatttta----taccaaaacatcaattccaaagtttg |
139 |
Q |
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| T |
4419702 |
gtatatggcagcagtttgttcatcttcattttatacgtaccaaaacatcaattccaaagtttg |
4419764 |
T |
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