View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19034_high_8 (Length: 252)
Name: NF19034_high_8
Description: NF19034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19034_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 11470549 - 11470329
Alignment:
| Q |
11 |
cacagaaaatgaattgggtgtcaataatgtcattactaaaattaaggatgacatttttaattgtataagtgaagaaactcatctgagttgcatcaaaatt |
110 |
Q |
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| T |
11470549 |
cacagaaaatgaattgggtgtcaataatgtcattactaaaattaaggatgacatttttaattgtataagtgaagaaactcatctgagttgcatcaaaat- |
11470451 |
T |
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| Q |
111 |
aatgatccttcaatatgcttatgtcctagataatttgagagggaacatgaatactatcaggatgagccatgacaacttcaaaattatattcaagtactta |
210 |
Q |
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| T |
11470450 |
---gatccttcaatatgcttatgtcctagataatttgagagggagcatgaatactatcaggatgagccatgacaacttcaaaattatattcaagtactta |
11470354 |
T |
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| Q |
211 |
tttcagtctctcccatgaatgaagt |
235 |
Q |
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| T |
11470353 |
tttcagtctctcccatgaatgaagt |
11470329 |
T |
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