View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19035_high_12 (Length: 204)
Name: NF19035_high_12
Description: NF19035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19035_high_12 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 13207689 - 13207486
Alignment:
| Q |
1 |
tcacttattaacactatcaaattttgttcagaaaaataaataccactggaagttgttttaaggttttggagctataaaaacaccatcgtacaacaaccat |
100 |
Q |
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| T |
13207689 |
tcacttattaacactatcaaattttgttcagaaaaataaataccacttgaagttgttttatggttttggagctataaaaacaccattgtaaaacaaccat |
13207590 |
T |
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| Q |
101 |
gaattatgaaggaagaaaggtgttgtgtcagaggcagctgttattatgagagaaggaagaaaggaatgtgggtgttgtaccagagagaaagaagattaga |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13207589 |
gaatgatgaaggaagaaaggtgttgtgtcagaggcagctgttattatgagagaaggaagaaaggaatgtgggtgttgtaccagagagaaagaagataaga |
13207490 |
T |
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| Q |
201 |
gcgc |
204 |
Q |
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|||| |
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| T |
13207489 |
gcgc |
13207486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 43378916 - 43378713
Alignment:
| Q |
1 |
tcacttattaacactatcaaattttgttcagaaaaataaataccactggaagttgttttaaggttttggagctataaaaacaccatcgtacaacaaccat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||| ||||||||| |
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| T |
43378916 |
tcacttattaacactatcaaattttgttcagaaaaataaataccacttgaagttgttttatggttttggagctataaaaacaccattgtaaaacaaccat |
43378817 |
T |
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| Q |
101 |
gaattatgaaggaagaaaggtgttgtgtcagaggcagctgttattatgagagaaggaagaaaggaatgtgggtgttgtaccagagagaaagaagattaga |
200 |
Q |
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| T |
43378816 |
gaatgatgaaggaagtaaggtgttgtgtcagaggcagctgttatttagagagaaggaagaaaggaatgtgggtgttgtaccagagagaaagaagataaga |
43378717 |
T |
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| Q |
201 |
gcgc |
204 |
Q |
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|||| |
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| T |
43378716 |
gcgc |
43378713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 11339492 - 11339387
Alignment:
| Q |
1 |
tcacttattaacactatcaaattttgttcagaaaaataaa--taccactggaagttgttttaaggttttggagctataaaaacaccatcgtacaacaacc |
98 |
Q |
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||||||||||| ||| ||||||||||||| |||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||| || ||||||| |
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| T |
11339492 |
tcacttattaatactgtcaaattttgttctgaaaaataaaaataccacttgaagttgttttcaggtttgggagctataaaaacaccattgtgaaacaacc |
11339393 |
T |
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| Q |
99 |
atgaat |
104 |
Q |
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|||||| |
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| T |
11339392 |
atgaat |
11339387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 11336500 - 11336441
Alignment:
| Q |
130 |
agaggcagctgttattatgagagaaggaagaaaggaatgtgggtgttgtaccagagagaa |
189 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
11336500 |
agaggcagcagttattatgagagaaggaagaaaggaatgtgtgtgttgtatcagagagaa |
11336441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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